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Detailed information on CNT30104268


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555586Oryza rufipogonOryza glaberrima11.4725.1383.33150forward
CNT30603966Oryza rufipogonOryza punctata13.6957.9384.36179forward

Expression of CNT30104268

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MVHQNRLCSPLSPRSSVETIHVLNRSQDRSKFRKTCIGHSRRIAPLQQIHAPATAFTT*

>peptide 2 (63 aa)
MMAQAAAALSASSTTLMSTLPTISECVDAMTAAYQWMTLSSFRWLEELCREAEVGYVDISWGF*

>peptide 3 (57 aa)
MLFSAELHILDQSSMVIHTQKFCWYISHGNYILFFLPFHLNSQSAYILYGPFLMFGA*

>peptide 4 (48 aa)
MHVHQNKDICFSLLNCIFWINHPWSSILKNFVGISVMEITFYFFFLFT*

>peptide 5 (68 aa)
PRSGVATSPSTPAVPPLSPSVISLSTPTVPPLSPSAISLSTPAVLLLSPSDAIADLLTAVAIATTIDS*

Sequence

>CNT30104268
CCTAGATCGGGTGTTGCCACATCGCCGTCCACGCCTGCGGTTCCTCCCCTCTCCCCTTCCGTGATCTCCCTCTCCACACCCACGGTTCCTCCGCTCTCCC
CTTCCGCAATCTCCCTCTCCACGCCCGCGGTTCTTCTGCTCTCCCCTTCAGACGCCATAGCCGATCTCCTCACGGCCGTTGCCATCGCGACCACCATCGA
TTCCTGACCGCCAATTCGGGGTCACGGTGACCGAGCCCCCGCCGATCGTCCCATCACGCCACCCCTTCGCCACTCACTGCCAGGTCGTCATCCATCGTTC
CTCCTCTACTCACGATCCCCAACATGGTCCATCAGAATCGTTTGTGCTCTCCGCTCTCTCCAAGGTCATCGGTTGAAACCATCCATGTGCTGAATAGGTC
TCAAGATAGGAGCAAGTTCCGCAAGACGTGCATTGGACACAGCCGTCGCATCGCTCCTCTGCAGCAGATCCACGCACCGGCCACCGCCTTCACAACATGA
TTTGGAGGTGGAGAAGCTTGGTGTGCCCTCGACGAGTTCTTCCACAAATTTACTACCCTCGATGATGGCCCAGGCCGCGGCGGCTTTGTCGGCTTCTTCG
ACAACACTAATGTCTACCTTGCCAACAATATCTGAATGTGTTGATGCGATGACTGCAGCTTACCAATGGATGACTCTGTCATCTTTTCGCTGGCTTGAAG
AACTCTGCAGAGAAGCAGAGGTAGGATATGTTGACATCAGTTGGGGGTTTTGACGTTTCTTAAGTTTTTTTCATTGAACTTGATCAGCCAAATAAGCTAT
TTTAGACGTGATTCATGACCTGTTAGTCTGAAGCGAAAGCAGAATCAGATTCAAGAAATGCAGATGTAGAACTATCCAATCATATCGATCGAGCACAATC
TTGTCATGCCATTGCCAGACATCCATTCTTGCACAAAGGAAACTCCACTCAAGATTGTTAGATAATGCATGTACATCAAAATAAAGATATATGCTTTTCT
CTGCTGAACTGCATATTCTGGATCAATCATCCATGGTCATCCATACTCAAAAATTTTGTTGGTATATCAGTCATGGAAATTACATTTTATTTTTTCTTCC
TTTTCACCTAAACTCACAGTCTGCATATATTTTATACGGTCCCTTCTTAATGTTTGGGGCTTAGCTATTAGTATTTACAAATTCATACATGTGAGTGTTA
CCTCAATATGTATTATCTGATCTATACAAGTTCATACTGAACTGGTATTATACAATGTACACAAACTATTTGATTCTATAATGGACTTAGTAGATATGTA
CTTACAAA