Detailed information on CNT30104253


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553408Oryza rufipogonOryza glaberrima69.6577.3998.14592forward
CNT30110454Oryza rufipogonOryza longistaminata1246.3694.12102reverse complement
CNT30577254Oryza rufipogonOryza barthii59.0664.5295.62502reverse complement
CNT30116624Oryza rufipogonOryza nivara69.415798.31590reverse complement

Expression of CNT30104253

Peptides detected in this lncRNA

>peptide 1 (32 aa)
NLQRTPGLSVLGLVQFGMGDRSKCAEKTCVGL*

>peptide 2 (33 aa)
MGDRPRNSSRVHTSEDKVCRKDMCWSVRAVYDL*

>peptide 3 (66 aa)
MVSEPTLAVSRARVSQLRRHGAHGWCRPGVVTQHGTCAGTGHMDVAKRGRSWPRVDRRGRRSLLRG*

>peptide 4 (81 aa)
MKAIRCKRARPGGRRDVTITLKSFLPPRLKQHKRLGLWVEAAEQPAGCVATQPTPARPAASRGSWILAATCSWPEPRGWGGM

>peptide 5 (82 aa)
MKAIRCKRARPGGRRDVTKWYQSRLSRFHGRVCRSCAGMVRMAGVDRELLHSMAHALALDTWTWPREDVPGLGLIDGGVDLS*

Sequence

>CNT30104253
CCAATCTCCAAAGAACTCCAGGGTTAAGCGTGCTTGGCCTGGTGCAATTTGGGATGGGTGACCGGTCAAAGTGTGCAGAAAAGACATGTGTTGGTCTGTG
AGGGCAGTCTATGACCTATGAAAGCTATCAGATGTAAGCGGGCCCGGCCTGGGGGAAGGCGGGACGTTACAAAATGGTATCAGAGCCGACTCTCGCGGTT
TCACGGGCGCGTGTGTCGCAGTTGCGCAGGCATGGTGCGCATGGCTGGTGTAGACCGGGAGTTGTTACACAGCATGGCACATGCGCTGGCACTGGACACA
TGGACGTGGCCAAGAGAGGACGTTCCTGGCCTAGGGTTGATCGACGGGGGCGTCGATCTCTCTTAAGGGGGTGAGGGTGTAACATCCCAGCCTAGGGCTT
AATAGGATTAATAGAATACTTATATCAACAAGTTGCAACTTCTTTTCTGGAATCCAATCTCCAAAGAACTCCAGGGTTAAGCGTGCTTGGCCTGGAGCAA
TTTGGGATGGGTGACCGACCGAGAAATTCTTCCCGGGTGCACACGAGTGAGGACAAAGTGTGCAGAAAAGACATGTGTTGGTCTGTGAGGGCAGTCTATG
ACCTATGAAAGCTATCAGATGTAAGCGGGCCCGGCCTGGGGGAAGGCGGGACGTTACAATTACCCTGAAATCCTTCCTTCCTCCGAGATTGAAGCAGCAT
AAGCGGCTTGGGTTGTGGGTGGAAGCGGCGGAGCAGCCCGCAGGCTGCGTCGCCACTCAGCCAACTCCGGCGCGCCCGGCAGCGTCGAGGGGGTCCTGGA
TCTTGGCGGCGACTTGCAGCTGGCCGGAGCCAAGAGGTTGGGGCGGCATG