Detailed information on CNT30104240


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697283Oryza rufipogonOryza sativa98.9757.95100481forward
CNT30109503Oryza rufipogonOryza longistaminata83.9510099.51408forward

Expression of CNT30104240

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MRGNVSSVISGGDEAFQVINDPASVSSPYVLLYIGIYPFKCHLLQTSVSK*

>peptide 2 (57 aa)
KLLRRQEALARQHFHLAAAVIAAAARAFAPRRGLDEGKCLQRHLRRRRGFPSDQRSC*

Sequence

>CNT30104240
GTAAACTACTCCGCCGCCAAGAGGCCCTAGCAAGGCAGCATTTCCACCTCGCCGCCGCCGTCATTGCCGCCGCGGCGCGGGCGTTTGCTCCGCGACGAGG
ACTCGATGAGGGGAAATGTCTCCAGCGTCATCTCCGGCGGCGACGAGGCTTTCCAAGTGATCAACGATCCTGCTAGTGTGAGTTCTCCCTATGTATTACT
CTATATTGGCATTTATCCTTTTAAGTGCCATCTCCTTCAGACTTCAGTGAGCAAGTAGCATTTTGGTCTTCCTAGCAAGTAGCAACATATCATCACAAAA
TCAGATCTTATGATCTTGTGGTGTTTTTAATTTCTTCTCCTAATTTGTTTAGGAGTCATAAATGCACCAAAGAGAGGATGTTTGTTTCTTTATTTATGAC
GGAAGTGACTGAATTAACGGAATAAAACACCATTGTAATAGTCTGGCACTCTGCTGCTGCTAGTACTGCATTTGTGTTACTTAAAC