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Detailed information on CNT30104239


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001792, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30593965Oryza rufipogonEragrostis curvula7.3720.2894.7457reverse complement

Expression of CNT30104239

Peptides detected in this lncRNA

>peptide 1 (78 aa)
KRNRSDSPVALAAAPPALCHRRCCSSLHRRRRWCSRRRSPQPSSSAAGRWKEGEKAEKNRKEGKKGKFDRRREIWGIW*

>peptide 2 (31 aa)
MHKSCVYFTSSRLYLLSILYSLLCLIWFLGT*

>peptide 3 (67 aa)
KKQERFSCSPSRRTSCALPPPLLFLSSPAPPLVQPSPVATAVVVRSRSLEGGREGREEQEGRKEGEI*

Sequence

>CNT30104239
AAAAGAAACAGGAGCGATTCTCCTGTAGCCCTAGCCGCCGCACCTCCTGCGCTCTGCCACCGCCGCTGCTGTTCCTCTCTTCACCGGCGCCGCCGCTGGT
GCAGCCGTCGCCGGTCGCCACAGCCGTCGTCGTCCGCAGCCGGTCGTTGGAAGGAGGGAGAGAAGGCAGAGAAGAACAGGAAGGAAGGAAAGAAGGGGAA
ATTTGATAGAAGAAGGGAAATTTGGGGAATTTGGTGAATATTTCCAAATTCTTCGTTTTTCTTATACATTAGTACTGCTAGAACCATGCGTAGCCATGGG
AGTGCAATTTGGATCTTTATTCATGATCCTTGAGAAGCGCTGATCACGCTTGCTCGGCTTACCGGTAATGCTAAGAGTATATTCACACCTGCCCGGGAGG
GAACTACTATCTTTTGACTTCTTTGGTTTAAAAATAAAGTAAATCCAACCCTTCATGTTGGTTTCTTAATGCATAAATCATGCGTATATTTTACTAGTTC
AAGATTGTACTTGCTGAGTATTCTTTACTCACTCTTGTGTTTAATTTGGTTTTTAGGTACCTAATGACATCGATCGGCATGGGGCGGGAGTAGCACCCTT
GGACTACACATTATTATTGCACACAATTGAAATTAGTTTTAGACTATAATTTTTGCTCAGCATAAGTTTTGCATAGAACTTGTAAAGGTCATTTAAGGTT
CTGATCCTTATTTTTAACGTGGGATTTGTGGAGCTAGGATGGTTTGGATTGTGTGGTTTATATCGGTAGAGAC