Detailed information on CNT30104217


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006839, E-value = 4e-151

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30371272Oryza rufipogonOryza glumipatula32.7277.2797.95391forward
CNT30109632Oryza rufipogonOryza longistaminata38.4989.4998.04460forward
CNT30578269Oryza rufipogonOryza barthii38.2462.3599.34457forward

Expression of CNT30104217

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MSYVSCVVIALPRAARAMSDLLQLGSCSVGLP*

>peptide 2 (37 aa)
MRFSIVLVISSAFHRSSIQDLEASGSCNSSLSIAGQP*

>peptide 3 (34 aa)
METLSSSSPFFLPCLIFSFLQAELPAHFFPSNLL*

>peptide 4 (33 aa)
SLKFNLVLSIPLFTFLLELKYFEFLSVTLKNGN*

>peptide 5 (33 aa)
MCHVPRCTLTLLWYLLCLLIACDESVRLVAFLGT

>peptide 6 (77 aa)
MNERVKIPENSLFSMCTYVSNFPLSAPWVQLDLAPLVTDFGSPTSPIPPPGRAPTSAPYDKQLWKLFHLLPLSFSLV*

>peptide 7 (67 aa)
MFLTFLYLPHGSSSTWPHLSLTSALQQAPSHLQVVHPPQLHMTSSYGNSFIFFPFLSPLSDLFFLAS*

Sequence

>CNT30104217
CCTCCTTAAAATTCAATTTAGTTCTCAGCATACCACTTTTTACCTTTTTGCTAGAATTAAAATATTTTGAATTTTTGAGTGTAACTTTGAAAAATGGAAA
CTAGGTAACTCAATCTATCTCCACACCTGAACACACATTTTTGACACTCGTGTAGCTAGGTCAAACTAATTACCCATGAATGAGAGAGTGAAAATTCCTG
AAAATTCACTATTTTCAATGTGTACCTATGTTTCTAACTTTCCTTTATCTGCCCCATGGGTCCAGCTCGACTTGGCCCCACTTGTCACTGACTTCGGCTC
TCCAACAAGCCCCATCCCACCTCCAGGTCGTGCACCCACCTCAGCTCCATATGACAAGCAGCTATGGAAACTCTTTCATCTTCTTCCCCTTTCTTTCTCC
CTTGTCTGATCTTTTCTTTCTTGCAAGCTGAGCTCCCAGCTCACTTCTTCCCATCAAATCTCCTCTAAACACTTGGGATTCATCCCTGCATGTCACACCA
CTAAACCCCCATCACTCTAAGCTCCTCATCCATCCGAAAATCTCCCACATGCATGGATTCGTGAGAGAGATCGAGAAGAAGGAAGAACAAGCAACTTGCA
GCCTATGAGGTTACAGCAGCAGGGAGAACTTATTTCCATTGATTTATGAGTTTCCCTCTCCATCCATGGCTCCCCTATGAGGTTCTCCATTGTGTTGGTC
ATCTCTAGTGCATTCCATAGGTCATCGATTCAAGATTTGGAGGCAAGTGGTAGCTGCAACTCGTCCCTCTCCATTGCAGGACAACCCTGAGATTCTTCGG
TTTACTCTCTTGATTCGGAGATTCCGGAGAGTAACGAGCCATATCCCAAGGAGGATAGTGACTACCCTCAGCAGCAAGGAGAGGATTCCGGTTATGAGTT
ATGTTTCTTGTGTGGTCATTGCTCTGCCGAGGGCGGCGAGGGCAATGAGTGATCTCTTGCAGCTTGGCTCTTGCTCGGTTGGTTTGCCCTAGTGGGGTTG
TGGCACCACCGGTTTTATCTTTTGCTTATGAACTCTAATTGAGACTTCCGTTGCTATATTTATGTGTTGTATGTTGGGACCTCGGACCCTTTTATGTGTC
ATGTACCTCGCTGCACTTTAACCCTATTATGGTACTTGCTATGTTTATTAATTGCTTGCGATGAAAGTGTGAGGCTAGTCGCATTCCTAGGGACT