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Detailed information on CNT30104206


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004321, E-value = 3e-166

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697118Oryza rufipogonOryza sativa77.7663.35100605forward

Expression of CNT30104206

Peptides detected in this lncRNA

>peptide 1 (89 aa)
RRSNPSPQKQIHRRLRIAVASSASTSIPRRRRSPSTPLLSPLLLRRLFLAQSTASSPPPHPSYSLSHPHPHPNHSFRKSGTKINRITAK*

>peptide 2 (82 aa)
AEVTHLLRSKSTAASALPSPPPPLLPFHVAGEVHPRRCFLLSSSGVSSSHSPPPPRLHRTPPTRFLIPIPIPITASEKAGQR*

Sequence

>CNT30104206
CGCAGAAGTAACCCATCTCCTCAGAAGCAAATCCACCGCCGCCTCCGCATTGCCGTCGCCTCCTCCGCCTCTACTTCCATTCCACGTCGCCGGCGAAGTC
CATCCACGCCGTTGCTTTCTCCTCTCCTCCTCCGGCGTCTCTTCCTCGCACAGTCCACCGCCTCCTCGCCTCCACCGCACCCCTCCTACTCGCTTTCTCA
TCCCCATCCCCATCCCAATCACAGCTTCAGAAAAAGCGGGACAAAGATAAATCGGATCACAGCTAAATAGTTTGGAGAATACACTTGGTTTCTTGCCCTG
CGTCAGTCTGTTGGGCAAATATGTGAATCAAGGACACAATTAAATTTGAAGATCTACATATCTGCACCGATGGTTCAAAAATGGCTGTAAATCAGTAACA
CTTTTGTCAAAATAATCCTGTTCACTTTAATTTTTTTCCCTTCTGAGTTCTGAAGCTGAAAGCCAAGCAAACAGCTCATGGTCACTATATTATTGGTTCT
CGTGTCCATGAGGCCTGAGGACACCTTAACCTTAACCTATTAATTAACAACAAAGTTTTAGTTCTACTCTACAATTAGCCTATGTAATTAGTACAACACT
AGGTACTGAATGCTACAGTTTCTAACTCTGCATTTACCCTATGTAATGTCAATCATATATTGCAGACTGTTTATGCACATGTCAAGATTATAGCGTGAAT
TTGACAGCCGAAATGTAAATGACTGCATCTGCCCATCTCTAATTTTTATCTAGAGACTAATATGACAATCCACTAGCC