Detailed information on CNT30104189


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697104Oryza rufipogonOryza sativa84.9449.19100423forward

Expression of CNT30104189

Peptides detected in this lncRNA

>peptide 1 (39 aa)
AVAFPPEEEEEMGHPAAGREERRRRPMASRAARRGDHWK*

>peptide 2 (60 aa)
MSWSLRQQAIEISSRASGVVLELKSGSFVFGNCFIELRGTLASYSFSFFTFKALTSIERKE

>peptide 3 (62 aa)
MDLGQKKEIGQAFGLHPLCSSDNRQHLLELKDVMVIETTGDRNILKSFRGGFGVEIRELCVW*

>peptide 4 (49 aa)
GRGLPAGGGGGDGPSGGGAGGASAETHGVAGCPPRRSLEVAVQSINEAE*

>peptide 5 (53 aa)
PWPSRRRRRRRWAIRRRGGRSVGGDPWRRGLPAAEITGSSSSKHKRSRIKRLQ*

Sequence

>CNT30104189
GGCCGTGGCCTTCCCGCCGGAGGAGGAGGAGGAGATGGGCCATCCGGCGGCGGGGCGGGAGGAGCGTCGGCGGAGACCCATGGCGTCGCGGGCTGCCCGC
CGCGGAGATCACTGGAAGTAGCAGTTCAAAGCATAAACGAAGCAGAATAAAGAGATTACAATAGTGGTAAATTTTCCTGAGTGGCCACAAAAGAGAAGGT
CGTTCACAAAAGCGAGGGGATGGATTTGGGACAGAAGAAGGAGATAGGACAGGCATTTGGGTTGCACCCTCTTTGTTCATCCGACAATCGCCAACACCTT
TTGGAGCTCAAGGATGTCATGGTCATTGAGACAACAGGCGATCGAAATATCCTCAAGAGCTTCAGGGGTGGTTTTGGAGTTGAAATCCGGGAGCTTTGTG
TTTGGTAATTGCTTCATTGAGCTTCGTGGAACATTGGCAAGCTACTCCTTCAGTTTCTTCACCTTTAAGGCCTTAACTTCAATCGAGAGGAAGGAAGC