Detailed information on CNT30104184


BLAST search results

BLAST vs Swiss-Prot:
sp|F7J0M4|RGA4R_ORYSJ, E-value = 1e-165

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697109Oryza rufipogonOryza sativa62.0897.9799.871596forward
CNT30555298Oryza rufipogonOryza glaberrima24.4796.1899.68629forward
CNT30597053Oryza rufipogonOryza meridionalis91.1766.6399.022344forward
CNT30371327Oryza rufipogonOryza glumipatula91.2959.6499.872347forward

Expression of CNT30104184

Peptides detected in this lncRNA

>peptide 1 (42 aa)
DYNMQLVHSVARYEQIIMLKQKCSQICNQLQILVYLYTTLLL*

>peptide 2 (56 aa)
MQDELKHHAVSLACLHLSVTARSNRLNDAPVDQLVEVVCSNIQRTSERVCLNKPFS*

>peptide 3 (44 aa)
MCQAWQLDDLYGQNFYLCSSYIECLQKFQFCDLLWEHCNSAPKA*

>peptide 4 (68 aa)
MTCMGRTFIFVLRTSSVSKNFSFVISFGSIVTVPPRLKYLSSNSLHIFLRCSSFKFSHSSRSKTLSSS*

>peptide 5 (41 aa)
MEWMAVVTSTMLLDPVSTGKASFIVLFQYSLWISSITMKNL*

>peptide 6 (65 aa)
MYWMLMPHSPFRSLQSSRNDSRFGRAPCWISGSVMVCTMMHKRRRLLSGPCPMTNFSRLGVISLR*

>peptide 7 (52 aa)
MEVICLFCLLASESLSSRNLPGKTSAYSLGLGSTPQNSEKASGHRSYWCPSG*

>peptide 8 (37 aa)
MVLHCFLPLLFCFFANSFVKSNLLEAFGADVLDVDAT*

>peptide 9 (33 aa)
MATGENTKIEQAGLDNMARKAGIVVNKYMLHSF*

>peptide 10 (31 aa)
MLLDPVSTGKASFIVLFQYSLWMSSITMKNL*

Sequence

>CNT30104184
GATTATAATATGCAGCTAGTGCACAGTGTAGCAAGATATGAGCAGATAATAATGTTGAAACAGAAGTGCAGTCAAATTTGTAATCAACTACAGATTCTTG
TATATCTGTACACCACTCTTTTGCTGTAACTTGGAAAGAGTGGTGTCACCATGATGCAGCTTGTGGTGAAGAGCGAGATAGAAAGAGAGTAACTGATGAC
GACAGTGAGCAGAGCCAGCCCAGAGGATGTTCTCGCTATCTAGCAGAAATGGTGACATTCATCATTCACAGGGTTCAGCTTGCCTGGTGAAGTCCCATTA
GTTTTGAAGTATGGCTCAGTATTGCTGCAAGATTCCCTAGAGGTTTGGCCCATGGAACAGAGATCTAAGGTCCTTTCTTGATCTGCCTTTGGACGTCTAA
AAACCGGAACCGGCCTTAGGGAGCCGGCAGCCAAAGCCAGTGCTGCAGCATCCTCTGTAGGCTGAGCAACCTCCATATTCTGCATCTGACCAACCTCTCC
TGTATTAACAAATGAGACCTTGGGCCGTCTAGGATGGTTCTTCACTGTTTCCTTCCACTTCTTTTTTGTTTCTTCGCTAATTCTTTTGTCAAGAGCAACC
TCCTTGAGGCATTCGGGGCCGATGTACTGGATGTTGATGCCACATAGCCCATTTAGATCCTTACAGAGCAGCCGGAATGACTCCAGATTTGGCAGAGCCC
CCTGTTGGATTTCTGGCTCGGTCATGGTTTGCACCATGATGCACAAGCGTCGTAGGCTTTTGAGTGGACCCTGTCCTATGACAAACTTTTCCAGATTAGG
TGTAATCAGTTTGAGGTAATGCAAACAGCGAACATTGCTTAGAGCAGCAAGAACATCCCTGTTGAGCTTATCAGAGGATGATAGACACAGCTCAGTAAGA
CCTTTCAGCAAGGTTACAAATGGAGGTAATATGTTTATTTTGCCTTTTAGCTTCAGAGAGCTTAAGTAGCAGGAATCTTCCAGGGAAAACTTCAGCATAT
TCTCTTGGTCTTGGAAGCACCCCCCAAAATTCAGAGAAAGCGAGCGGACATCGTTCATATTGGTGCCCCTCTGGATGAAAACTTGAATGGCCTTTGAAAG
GTGAACAGTGTTGCTGCTAGAATTGGAAGGGGTCTCGCTCTCGCACCATATTTTAACCTTGGCCAAGTTTTTCATATGATCAATGAGTTGAGGAAATCCT
TGGTCATTATTGGCAAAAAATCCCGCTAGTGTCTCCAGCTTACTTTTCTCAGACAGATACTTCTGTAGCTTGCTAATTTTCTGGCCTACATCTTGAAGTT
TGAAATTTCCAAATAGATGTGTCAAGCATGGCAGCTTGATGACTTGTATGGGCAGAACTTTTATCTTTGTTCTTCGTACATCGAGTGTCTCCAAAAATTT
CAGTTTTGTGATCTCCTTTGGGAGCATTGTAACAGTGCCCCCAAGGCTTAAATACCTGAGCAGCAACAGCTTGCATATCTTCCTGAGATGTTCATCTTTC
AAATTTTCACATTCTTCAAGATCCAAAACTCTCAGTAGTTCATAACTGGAGAATTCTAAAACAGAGTCTTCTGCCTCTCCGAAGATTGTCAAAGACCGAA
CATGAGATAAATCAATGTCTGAGTTCATTCTGCCCCTTCTGGTGCTGTTATGTTGCACAGTAAGGCAACGTATTTTGTCAGGCAGGCAAGCTTGATCATA
TAGCAACGTAATGAAGTCATCGCACATGGACTTATGCAGGATGAACTCAAGCATCATGCCGTGAGTTTGGCATGTCTTCACCTCAGTGTTACTGCTCGTA
GCAACAGGCTGAATGATGCTCCGGTTGATCAGCTCGTTGAAGTAGTCTGTAGCAACATCCAGAGAACTTCGGAGAGGGTCTGCCTCAACAAGCCCTTCAG
CTGACCATCGCCTTATCAGTTTTCCTCTCCTGACCGGATGGCCACTGGGGAAAATACCAAAATAGAGCAAGCAGGCCTTGATAACATGGCCAGGAAGGCT
GGTATAGTTGTGAACAAGTACATGCTTCATTCTTTCTAAAGTATCCTCTCTTTCCAGATGCATACCCAGATTGCCACACAACTTTGCATATTCTTGTGGT
AGCTGTTGACCTTTACTTTTCAAGAATTGGGCTGTTGATACAAGGGCAAGTGGTAAACCATCACATTTAGTACTCAGCACTGTTTCTGAACCAGAGCTGC
AGGCATTTGCTATGGAATGGATGGCCGTCGTCACCAGCACTATGCTGCTTGATCCTGTATCTACAGGGAAAGCATCTTTTATAGTACTGTTCCAATATTC
CCTCTGGATATCATCAATTACAATGAAGAACCTATAGAGATGTATTGTCGTCACCAGCACTATGCTGCTTGATCCTGTATCTACAGGGAAAGCATCTTTT
ATAGTACTGTTCCAATATTCCCTCTGGATGTCATCAATTACAATGAAGAACCTATAGAGATGTATTTAGAAATAAGGATGGGAAAGTGTCCTGAACATTA
TGGAGTATTTTAGAAACCAAAGAGACGTTTCCGTGTGCAGAATGCTATACACGGGATGGATAGACTTCCCG