CANTATAdb - search

Detailed information on CNT30104166

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000219, E-value = 8e-24

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30228891	Oryza rufipogon	Ananas comosus	55.72	46.17	84.04	307	forward
CNT30340361	Oryza rufipogon	Eragrostis tef	58.26	61.38	91.9	321	forward
CNT30578254	Oryza rufipogon	Oryza barthii	50.27	99.28	99.64	277	forward
CNT30117970	Oryza rufipogon	Oryza nivara	56.44	47.19	99.36	311	forward

Expression of CNT30104166

Peptides detected in this lncRNA

>peptide 1 (57 aa)
RQTTNLDIKDATKKVHINNTGHSSESYKQTLHNRKANVFQNQTHKLIDRSPHGQIIG*

Sequence

>CNT30104166
TACGACAAACCACGAACTTGGATATTAAAGATGCCACAAAGAAGGTTCACATAAACAACACAGGTCACAGCAGCGAAAGCTACAAGCAAACCCTGCATAA
TCGAAAAGCAAATGTTTTTCAAAACCAGACACACAAACTGATAGATAGAAGCCCACACGGACAGATCATAGGATAGCAGCAGTAATCAAGCATTGCCAAG
GCACCAGGCAAGAACCCTGAACCTCTCTAGTACTCGTCACCCTCATCACCCTCGTCACCATCGTCGAACTCGGAGCCGACCTCCTCGTAGTCCTTCTCCA
GCGCGGCGAGGTCCTCGCGGGCCTCGGAGAACTCCCCCTCCTCCATGCCCTCGCCGACGTACCAGTGGACGAAGGCGCTGTTGGTGATCTCCGCCACGGA
GAGCTGCTCGTGGTAGGCCTTCTCGGCCGAGATCACCGGGGCGTAGGAGGAAAGCATGAAGTGGATCCTCGGGTAGGGCACCAGGTTGGTCTGGAACTCG
TTGACATCCACATTCAGAGCACCATCGAACCTCAGGGAGGCAGTCAGTGAG