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Detailed information on CNT30104149

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30697166	Oryza rufipogon	Oryza sativa	29.77	49.74	100	290	forward
CNT30296921	Oryza rufipogon	Triticum aestivum	26.9	51.98	81.3	262	forward
CNT30223071	Oryza rufipogon	Hordeum vulgare	17.35	22.65	82.84	169	forward
CNT30392014	Oryza rufipogon	Triticum turgidum	17.04	32.05	82.53	166	forward
CNT30662954	Oryza rufipogon	Triticum dicoccoides	17.04	34.66	82.53	166	forward
CNT3074932	Oryza rufipogon	Brassica juncea	12.01	37.03	82.05	117	forward
CNT30136831	Oryza rufipogon	Lolium perenne	16.94	31.98	83.64	165	forward
CNT3068390	Oryza rufipogon	Leersia perrieri	16.43	30.25	90	160	forward
CNT30683693	Oryza rufipogon	Triticum urartu	17.04	21.28	82.53	166	forward
CNT30643000	Oryza rufipogon	Cannabis sativa	13.55	52.8	83.33	132	forward
CNT30151279	Oryza rufipogon	Brachypodium distachyon	17.04	30.07	87.35	166	forward
CNT30117928	Oryza rufipogon	Oryza nivara	33.57	46.58	97.86	327	forward
CNT30604795	Oryza rufipogon	Oryza punctata	25.15	15.5	88.16	245	forward

Expression of CNT30104149

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MASELASPRAASLKYCSASCTRLTFSCSFTSMYPYSMSFSIVILGCSNSASCQCSPHPCPTPTCAPRRRKHGHEERRRN

Sequence

>CNT30104149
TTAGAAGGAGTGCAAACCGTATTGTTCCCATTGCTTAATTTAGCATTTTGGCTGACAGTAAACCGTCTTACAGTATTGTTCTAAGAAAACACTGGATGGA
CACAGAAATTGACAAATGATACCCAAATGAAATATACTCATGTATAGTATAGCCCATATCTTTATATTATATTATTATTAACAAAAACTTGTCATGCCCA
GCTATGGCTTGGGCGCGATCTGATACACAGAACAAAGAGAAAACATAAAAAGGAGAAATAATTAATAGCAAGCGTCAAGCCGGCCTGCTTAAAAGGCCGC
CTACGATGCATCGATGGGATGCGAATAGCTAGAGATCTTTTATTCAGCTGGATGGCGCAGAACCTATAGACAGGGGCGGAGGTAGAATTTTGTCATGCAT
AGGGCTCAATCATTTAGTATAACAAATTGTAACTAGAAATTTATGCTTTTCCGGCCCTTATAATTTTCTTGCCACGTGTGGAGCTCAAGCCTAATTAAGC
TGTTCGACACGTGGCTCCGCCCCTGCGCTATAGATAGAATAACATGTATAACAAATCTTAATTTGTGCGTTTTAGCTGGTCATAATTAATTTAGAGGAAG
CTATTTTTGTTTCTTTCATAATATATATATATATATATATATATATACAGTGATAGAGAGAGATGTATCATATATATGATGATGGTGTAGAGTAGTGGGA
GGGTGTTGGATCTAACCGTAGAAGGAACCAGTCTTCATGGCGTCGGAGTTAGCGTCACCAAGAGCAGCCTCGCTCAAGTACTGCTCAGCCAGCTGCACAC
GCTTGACGTTCTCCTGCTCCTTCACAAGCATGTATCCGTACTCCATGAGCTTTTCGATCGTCATCTTGGGCTGCTCGAACTCCGCCTCTTGCCAATGTTC
TCCACACCCGTGTCCGACACCCACTTGCGCACCTCGTCGTCGTAAACACGGGCACGAAGAGCGCCGAAGAAATC