Detailed information on CNT30104147


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001506, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697227Oryza rufipogonOryza sativa24.0443.83100213forward
CNT30555405Oryza rufipogonOryza glaberrima71.6749.1599.84635forward
CNT30371329Oryza rufipogonOryza glumipatula41.4244.3297.82367forward
CNT30106601Oryza rufipogonOryza longistaminata24.0424.2399.06213forward
CNT30578166Oryza rufipogonOryza barthii24.0431.14100213forward

Expression of CNT30104147

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MMCCQWRLIDSRRRPLNFCLVFLEDTRDVFIVM*

>peptide 2 (69 aa)
EKGTGRRRTRRPSGEAAVAVGGGSAARGGGAGAKAKRRGGAAALGGQRWRRYPHPPPPSLISRSGAWRQ*

>peptide 3 (82 aa)
RKGDRAAEDSTALGRGGGGGGRRLSGAWRRRWCEGEAARWCGGARRPAVAAVPPSSSPFSYFSIWCVAAVRRARRRADAVAS*

>peptide 4 (38 aa)
MCLCAYDFVSDVASHRLQVSESGVVLLKPHDVLPMEIN*

>peptide 5 (43 aa)
KRGPGGGGLDGPRERRRWRWAAAQRRVAAALVRRRSGEVVRRR*

>peptide 6 (37 aa)
MQCLKPCSFPVVFSFVVCFSVPIVNLVSSSASCHLLKG

Sequence

>CNT30104147
AGAAAAGGGGACCGGGCGGCGGAGGACTCGACGGCCCTCGGGAGAGGCGGCGGTGGCGGTGGGCGGCGGCTCAGCGGCGCGTGGCGGCGGCGCTGGTGCG
AAGGCGAAGCGGCGAGGTGGTGCGGCGGCGCTAGGCGGCCAGCGGTGGCGGCGGTACCCCCATCCTCCTCCCCCTTCTCTTATTTCTCGATCTGGTGCGT
GGCGGCAGTGAGGAGGGCTCGACGGCGTGCGGACGCGGTCGCCTCCTAGAGGTCAGGGTTGACCGGATTCGGTGGCGGCCTCCGACTCCACACGCGAGCA
CCGGCCGTCGTCCTCACCGTTTCGAGCACCGATCGCCACCACCGCCGTTGAGGTTGGGGGACACTGGATCCAGCCTCCTAGAGGTCAGGGGACGCCGGAT
CCGGTCAACCCCGACCTCTACGAGGCGACCGTGTCCGCGCCGGACAGCCTTCTCTTCCGTCCCCAAGCGCCCTCCTCCTCCTCCATCCTCTTGCGGCCAC
CGCCGTAGCTTCCTCCTCCGGATTAATCCACTCCCAAGTACTGATCAATGTGTTTATGTGCTTACGATTTTGTTTCAGATGTTGCAAGTCATCGATTACA
AGTTTCTGAATCGGGTGTGGTCTTGTTGAAGCCCCATGATGTGTTGCCAATGGAGATTAATTGATTCTAGAAGAAGACCTTTGAACTTTTGTCTTGTTTT
TCTTGAAGATACTAGAGATGTTTTTATTGTGATGTAGCTAGAAAATTAGAATCTTAACATTTTCCCTGAAATGCAGTGTCTCAAACCTTGTAGTTTCCCA
GTAGTTTTTAGTTTTGTAGTTTGTTTTTCGGTTCCTATTGTAAACCTTGTAAGTTCTTCGGCTTCTTGCCATCTTTTGAAAGGAAT