Detailed information on CNT30104100


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30237226Oryza rufipogonBrassica oleracea18.8622.7483.5103forward
CNT30439071Oryza rufipogonAegilops tauschii39.1964.0789.25214forward
CNT30664005Oryza rufipogonTriticum dicoccoides39.1948.0985.98214forward
CNT307142Oryza rufipogonZea mays38.2816.6990.43209forward
CNT30217653Oryza rufipogonKalanchoe fedtschenkoi17.436.491.5895forward
CNT30481517Oryza rufipogonChara braunii16.4829.887.7890forward
CNT30319836Oryza rufipogonAsparagus officinalis23.2615.9181.89127forward

Expression of CNT30104100

Peptides detected in this lncRNA

>peptide 1 (56 aa)
QNFAVTKSIHRPHIQVVYRFVYTQGYCRGKTRGMYIKRSRKDSCDEIHDEPRMFSR*

>peptide 2 (39 aa)
AKLCSNQIDSQATHTGSIQIRLHTRLLQRQNTRYVYQTL*

>peptide 3 (60 aa)
MPSLASAASPSLRVLRRLHVLRLPAPRLEARVLQRPRVRERHVPRVGPLVHRVQVLRRLHL

>peptide 4 (57 aa)
MQYSFNFVHRSQPVTVTTHWLQCPRGTSSIAVAVVRSSSSSRFTVLIGLDRISRRSS*

Sequence

>CNT30104100
CGCAAAACTTTGCAGTAACCAAATCGATTCACAGGCCACACATACAGGTAGTATACAGATTCGTCTACACACAAGGTTATTGCAGAGGCAAAACACGAGG
TATGTATATCAAACGCTCTAGAAAAGATTCATGTGATGAAATACATGATGAACCACGTATGTTCTCAAGGTAAAATTAATTAATGCAGTATAGTTTTAAC
TTTGTCCATCGATCTCAACCTGTAACTGTGACGACACACTGGCTACAGTGCCCTCGAGGTACTAGCAGTATAGCAGTAGCTGTAGTACGTAGCAGCAGCA
GCAGCAGGTTCACTGTCTTGATTGGATTGGATCGGATTAGTAGACGTAGTTCTTGACGAACATGCCCTCCTTGGCCTCGGCGGCCTCGCCGTCGCTGCGC
GTCCTGCGCCGCCTTCACGTTCTCCGGCTGCCCGCCCCACGTCTTGAGGCACGTGTTCTGCAGCGCCCTCGCGTACGAGAACGACACGTGCCACGGGTTG
GGCCCCTGGTTCATCGCGTTCAGGTTCTGCGTCGCCTCCACCTCCG