« Back to Oryza rufipogon search


Detailed information on CNT30104015


BLAST search results

BLAST vs Swiss-Prot:
sp|Q53M52|TBA2_ORYSJ, E-value = 3e-125

BLAST vs NONCODE:
NONGMAT000219, E-value = 4e-49

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30712809Oryza rufipogonGlycine max14.953.7388.33180forward
CNT30555417Oryza rufipogonOryza glaberrima63.5895.1797.14768forward
CNT3075301Oryza rufipogonBrassica juncea14.6533.3384.75177forward
CNT30606894Oryza rufipogonGossypium raimondii14.3247.484.39173forward
CNT30371316Oryza rufipogonOryza glumipatula61.5162.9798.52743forward
CNT30578286Oryza rufipogonOryza barthii51.2464.4896.45619forward
CNT30174517Oryza rufipogonVigna angularis14.7488.5684.27178forward

Expression of CNT30104015

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MASLSSRTATSVCSRREWVERTLLYGSTTEVET*

>peptide 2 (73 aa)
MPHLNPVGHQSTNWMVRFVLMVATAAFTSLGTTSPRYIRQHAMYLPWRGSHLAIMEDGSKALLVISATESCSW*

>peptide 3 (36 aa)
MSMRENTSTTLVELEIMHTALCTLARSPPGTTLGGW*

>peptide 4 (76 aa)
QKNDFNAIDTTLRSRGFVLRQTTNLDIKDATKKVHINNTGHSSESYKQTLHNRKANVFQNQTHKLIDRSPHGQIIG*

Sequence

>CNT30104015
CAAAAAAACGATTTCAATGCTATAGACACAACTTTACGAAGTAGAGGCTTCGTTTTACGACAAACCACGAACTTGGATATTAAAGATGCCACAAAGAAGG
TTCACATAAACAACACAGGTCACAGCAGCGAAAGCTACAAGCAAACCCTGCATAATCGAAAAGCAAATGTTTTTCAAAACCAGACACACAAACTGATAGA
TAGAAGCCCACACGGACAGATCATAGGATAGCAGCAGTAATCAAGCATTGCCAAGGCACCAGGCAAGAACCCTGAACCTCTCTAGTACTCGTCACCCTCA
TCACCCTCGTCACCATCGTCGAACTTGATGTCGATGCGGGAGAACACCTCGACGACGCTGGTGGAGTTGGAGATCATGCACACGGCCCTCTGCACCTTGG
CCAGGTCTCCCCCCGGGACGACGCTGGGCGGCTGGTAGTTGATGCCGCACTTGAACCCCGTGGGGCACCAGTCCACGAACTGGATGGTGCGCTTCGTCTT
GATGGTGGCCACCGCGGCGTTCACGTCCTTGGGGACCACGTCGCCGCGGTACATCAGGCAGCACGCCATGTACTTGCCGTGGCGCGGGTCGCACTTGGCC
ATCATGGAGGACGGCTCGAAGGCGCTGTTGGTGATCTCCGCCACGGAGAGCTGCTCGTGGTAGGCCTTCTCGGCCGAGATCACCGGGGCGTAGGAGGAAA
GCATGAAGTGGATCCTCGGGTAGGGCACCAGGTTGGTCTGGAACTCGTTGACATCCACATTCAGAGCACCATCGAACCTCAGGGAGGCAGTCAGTGAGGA
GATGACCTGCAGCACATTAGCATTAGCCACATGATGTCAAGACAAATTGCACATTACATTGATCTTACAGCAAATAACTGGAGTACATAGCGCTGCAAGG
AAAGATGCAGGGCAGTACCTGGGACACAAGCCTGTTGAGGTTGGTGTAGGTTGGGCGCTCAATGTCGAGGGAGCGGCGGCAGATGTCATAGATGGCCTCA
TTGTCGAGCAGGACAGCGACATCGGTGTGCTCAAGGAGGGAGTGGGTGGAGAGGACACTGTTGTATGGCTCAACCACAGAGGTGGAGACCTGAGGGGACG
GGTACACGGTGAACCAATCCACATAATACAGCCTTTCAGATAGCGTTCTAATGACCTTTAAGAATATAATAGCACCTATCTTCAGATCAGATCAAAAGAT
TACTACGC