Detailed information on CNT30103992


BLAST search results

BLAST vs Swiss-Prot:
sp|P19656|NLTP_MAIZE, E-value = 1e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697712Oryza rufipogonOryza sativa69.0366.6795.33428forward
CNT30371396Oryza rufipogonOryza glumipatula70.3263.6594.72436forward
CNT30109910Oryza rufipogonOryza longistaminata18.2348.9297.35113reverse complement
CNT30578175Oryza rufipogonOryza barthii70.9772.1397.95440forward

Expression of CNT30103992

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MQFINVGLHVHRAVYRVKKIKIACTHGACNIKYTEIEREMTSAALICPSCYFYCSYYFG*

>peptide 2 (64 aa)
MINLLAAVSGEADGEADVDAALAGDAGGLAVGGGAGGVVQPLDAVAASLGEAAPPRHVRDARRDR

>peptide 3 (31 aa)
MHARSVQHKVYRDRERDDQRCIDMPQLLFLL*

>peptide 4 (52 aa)
MGKPTLTPHLPGMPAAWRSAVVRAALFSPLTPLQHPWVRPPLPVTYEMHGAIA

Sequence

>CNT30103992
GAAATTACTACAGATTGCCTCGGCAAGAAGCTGCCAAGCTGGAGTACGTAGTTAGCTAGGTCCAAGTCTGGACAAGATGCAATTCATCAACGTAGGATTA
CACGTACACAGAGCGGTGTACAGAGTCAAGAAAATTAAGATAGCATGCACGCACGGAGCGTGCAACATAAAGTATACAGAGATAGAGAGAGAGATGACCA
GCGCTGCATTGATATGCCCCAGCTGTTATTTTTACTGTAGCTATTATTTTGGCTAGTTGATCAACTGCGAGCCAGCATCGATCGATATATCGATCGGTCG
GTCCAAGCAGGATTAATCGATCTAGCTGACCCTGCACCAATGAAATAATCATGCATATATACAGTGGATTAGTCAGTAAATTAAGTTGAATTAACTTGAA
AAAAAGTAGCATGCATATGCATGGATGATTAATTTACTTGCTGCAGTCAGTGGAGAGGCTGATGGGGAAGCCGACGTTGACGCCGCACTTGCCGGGGATG
CCGGCGGCCTGGCGGTCGGCGGTGGTGCGGGCGGCGTTGTTCAGCCCCTTGACGCCGTTGCAGCATCCCTGGGTGAGGCCGCCCCTCCCCGTCACGTACG
AGATGCACGGCGCGATCGCC