Detailed information on CNT30103881


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002231, E-value = 9e-48

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678071Oryza rufipogonSetaria viridis27.6411.1583.97131reverse complement
CNT30472158Oryza rufipogonSaccharum spontaneum22.576.5583.18107forward
CNT30115866Oryza rufipogonOryza nivara25.536.2887.6121forward

Expression of CNT30103881

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MITVTPHCQIMTQLNLKYLSRNLHTICVISFFLYLILHACVKYLM*

>peptide 2 (48 aa)
ILSVNCETNLLCLINLSLANDYCNTTLSNHDAIKLKIFVSQFTHNLCN*

Sequence

>CNT30103881
AGATTTTATCTGTAAACTGCGAGACGAATTTATTATGTCTAATTAATCTGTCATTAGCAAATGATTACTGTAACACCACATTGTCAAATCATGACGCAAT
TAAACTTAAAATATTTGTCTCGCAATTTACACACAATTTGTGTAATTAGTTTTTTTCTATATTTAATACTTCATGCATGTGTTAAATATTTGATGTGATA
GGGTAAAAAGTTTCTGCGTTGATACTAAACAGGGCCTTTGTTGTTATGCCCAAAGGCAGGGGATGTGAACCCCAGACAAAAGAGCACTACATTTAGAATA
GTTCGTTCATAACTTTATACTGATAGTGCGGCATGATGCAAAATAGCGTATTACTCCTATCTATCAGTGCATCTTTACATAATATATTGTCAGTGCATGA
AAATAAAAAAAAGTAATGCTTTTAAAATGTAAACAACAAGAGACATAATTATTACTCCTTCCATTTCATATTGT