CANTATAdb - search

Detailed information on CNT30103863

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005030, E-value = 8e-93

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30551809	Oryza rufipogon	Oryza brachyantha	47.28	43.46	83.86	409	forward

Expression of CNT30103863

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MCHVSCCALTLLWYLLCLLIACDESVRLDAFLGTS*

>peptide 2 (33 aa)
LHCLFFLFFLKLSSHLTSPPQIPSNSPRSIPAC*

>peptide 3 (33 aa)
MHGELREIEIGEESGGFSLHGCSSNMTLFPSIC*

>peptide 4 (32 aa)
MSYASCVVIALPRAARAMSDLLQLGSCPFGLP*

Sequence

>CNT30103863
CTTCACTGCTTGTTCTTTCTTTTTTTCCTCAAGCTGAGCTCTCATCTCACTTCTCCTCCCCAAATCCCATCCAATAGCCCAAGATCAATCCCTGCATGTT
AGATCACAACAATCCCCATCATCCAAGTTTTCCATCCATCCGAACATCTTGCACATGCATGGAGAGTTGAGAGAGATCGAAATAGGAGAAGAGAGTGGTG
GTTTCAGCCTGCATGGTTGCAGCAGCAACATGACTTTGTTTCCCTCCATTTGCTAGGATGTGGCTGCAGCTCATCCGGTGTTAATCTCTTTTGATTTCGG
TTGAAGCAGCCTTAGGTTGCTGCCATGTGAGCGAAGTCCGGTGGAAGTTGGAGAAAAGGGGAGTGAAAATAGAAATCGATTTCTGAGATAGCTATTGAGC
TGAAAGAGATTCGGAGATTCCGGAGAGTAACGAGCCATATCCCGAGGAGGATAGTGACTACCCTCAGCAGCAAGGAGAGGATTCCGGTTATGAGTTATGC
TTCTTGTGTGGTCATTGCTCTACCGAGGGCGGCGAGGGCAATGAGTGATCTCTTGCAGCTTGGCTCTTGCCCGTTTGGTTTGCCCTAGTGGGGTTGAGGC
ACCACCGATTTTATCTTTTGCTTATGAACTATATTTGAGACTTCCGCTGCAATATTTATGTGTTGTATGTTGGGACCTCGGACCCTATTATGTGTCATGT
ATCTTGCTGCGCTTTGACCCTATTATGGTACTTGCTATGTTTATTAATTGCTTGCGATGAAAGTGTGAGGCTAGACGCATTCCTGGGGACTAGCTAAGCA
TGAGTAACGGATTTTGATCGCTTGAGATAATTGGGGATAGCGCTTTGGATCGAGTCACTGGGGTA