Detailed information on CNT30103845


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697110Oryza rufipogonOryza sativa65.2575.7899.66291reverse complement
CNT30183781Oryza rufipogonSecale cereale28.0318.384125forward
CNT30296302Oryza rufipogonTriticum aestivum27.82583.87124forward
CNT30391643Oryza rufipogonTriticum turgidum27.3520.8584.43122forward
CNT30439146Oryza rufipogonAegilops tauschii27.5828.2882.93123forward
CNT30258377Oryza rufipogonAvena sativa28.0318.3388.8125forward
CNT30136185Oryza rufipogonLolium perenne28.0318.9784.8125forward
CNT30111027Oryza rufipogonOryza longistaminata76.2377.6397.35340forward
CNT30578311Oryza rufipogonOryza barthii99.7899.3397.08445forward

Expression of CNT30103845

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MPGIPIGGGGPPIPGGAGKARGSNWAYMFC

>peptide 2 (46 aa)
MILSSFPLEASPFRPSEACPASPLAVEDRPYQVEQARREEAIGHTCS

>peptide 3 (30 aa)
GKVYMQNVYKLFYHTTYTNNGTSLCSSRST*

>peptide 4 (41 aa)
AKCTCKMSTSFFITQPIQIMVPAFAAPAQPNNHPSSYPIVI*

Sequence

>CNT30103845
CGGCAAAGTGTACATGCAAAATGTCTACAAGCTTTTTTATCACACAACCTATACAAATAATGGTACCAGCCTTTGCAGCTCCCGCTCAACCTAACAACCA
TCCCTCGTCCTATCCCATCGTAATATAATATATAGCAACCAGTCATTAACTCGACCTGGCTAGAGATTTCACTCGCCAAAATTGTCCTGGTACCAAAAGA
ATCAGTTTAAACAACCAATAATAGCACATCTACAACTTGAAAGATGCCTCCTCTTCTGTGTAAATTGAAATTCTTATCATCTAAATGAACTCTTCACAAG
TGGATGATACTCAGTAGCTTCCCATTGGAGGCATCCCCATTCCGCCCATCGGAGGCATGCCCGGCATCCCCATTGGCGGTGGAGGACCGCCCATACCAGG
TGGAGCAGGCAAGGCGAGAGGAAGCAATTGGGCATACATGTTCTGC