Detailed information on CNT30103844


BLAST search results

BLAST vs Swiss-Prot:
sp|Q53M52|TBA2_ORYSJ, E-value = 2e-37

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677910Oryza rufipogonSetaria viridis87.4771.488.89342forward
CNT3021397Oryza rufipogonCitrullus lanatus27.3716.1684.11107forward
CNT3041114Oryza rufipogonChlamydomonas reinhardtii35.0419.4991.24137forward

Expression of CNT30103844

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MPSPTYQWTKARLEYMRSNLMSMRENTSTTLVELEIMHTALCTLARLVWNSLTSTFRAPSNLREAVSEEMTCSTLALAT

>peptide 2 (66 aa)
LPRHQARTLNLSSTRHPHHPRHHRRTRSRPPRSPSPARRGPRGPRRTPPPPCPRRRTSGRRRAWST*

Sequence

>CNT30103844
CATTGCCAAGGCACCAGGCAAGAACCCTGAACCTCTCTAGTACTCGTCACCCTCATCACCCTCGTCACCATCGTCGAACTCGGAGCCGACCTCCTCGTAG
TCCTTCTCCAGCGCGGCGAGGTCCTCGCGGGCCTCGGAGAACTCCCCCTCCTCCATGCCCTCGCCGACGTACCAGTGGACGAAGGCGCGCTTGGAGTACA
TGAGGTCGAACTTGATGTCGATGCGGGAGAACACCTCGACGACGCTGGTGGAGTTGGAGATCATGCACACGGCCCTCTGCACCTTGGCCAGGTTGGTCTG
GAACTCGTTGACATCCACATTCAGAGCACCATCGAACCTCAGGGAGGCAGTCAGTGAGGAGATGACCTGCAGCACATTAGCATTAGCCACA