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Detailed information on CNT30103826


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001702, E-value = 4e-171

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30378024Oryza rufipogonArabidopsis thaliana16.3520.5184.07113forward
CNT3045136Oryza rufipogonPrunus dulcis19.9722.1983.33138forward
CNT30192533Oryza rufipogonSecale cereale29.5230.5484.31204forward
CNT3088050Oryza rufipogonVigna radiata28.2238.8485.13195forward
CNT30252036Oryza rufipogonAvena sativa21.859.4485.43151forward
CNT30466546Oryza rufipogonSaccharum spontaneum18.8148.8790.77130forward
CNT30680228Oryza rufipogonTriticum urartu28.0841.183.51194forward
CNT30365238Oryza rufipogonSorghum bicolor29.2336.6689.6202forward
CNT30371283Oryza rufipogonOryza glumipatula45.0158.6899.36311forward
CNT30155426Oryza rufipogonPrunus persica19.9746.7883.33138forward
CNT30705527Oryza rufipogonPrunus avium19.9729.8181.88138forward
CNT30593102Oryza rufipogonEragrostis curvula8.5427.1993.2259forward

Expression of CNT30103826

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MTHAKQSNNFFFTFYPYQHTAKGNNFLIR*

>peptide 2 (76 aa)
MGTLWRTTVSTVRWDSEGPRNVTAVISEHTARTRAPRLFSARSLATRSTVPPAKHPCWYIMRRFTLGLRPSILASW*

Sequence

>CNT30103826
AAAAAAAAGATCAACCAAACTTGAATGCACATCAATTTAGGTACACAAAATTAATTAAGTTTTCAAATTGAATAGTAACAGCCAAGCATCTCTTACACAG
GTTTACAATAAACCTCACCATCCATGACACTTAATTGACCTCCCTTTCTCTTTTCAGTATACATATATATGCTACTACCAACCAAACCACCCATACATGA
CACATGCAAAACAAAGTAATAATTTTTTTTTCACTTTTTATCCCTACCAACACACGGCAAAAGGGAATAACTTTTTAATTCGATAACGTTGTTATTGTAG
TAGTAGTTATTATTAGGAAATATATATATCTCGATATCGATATATATATAATTTTTTTTTATGATCGATGATAAAAGATGACGTGTGGCGTACGTAGGCC
GGCCGGCGGCGACCAGGGCGGAGCGCTCAGGCGGCGGCGCCGGCGGTGATGGGGACGCTGTGGAGGACGACGGTCTCAACGGTGAGGTGGGACTCGGAGG
GCCCCCGGAACGTCACCGCCGTGATCTCGGAGCACACGGCGAGGACGCGCGCGCCGCGGTTGTTCTCGGCGAGGTCCTTGGCGACGCGGAGCACCGTGCC
GCCGGCGAAGCACCCCTGCTGGTACATCATGAGGCGGTTCACGTTGGGCCTCAGGCCGAGCATCTTGGCGAGCTGGTAGTCGGCGCCGGGC