Detailed information on CNT30103824


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001916, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552519Oryza rufipogonOryza glaberrima51.427.6891.91235reverse complement
CNT30596312Oryza rufipogonOryza meridionalis23.4121.1587.85107forward
CNT30576741Oryza rufipogonOryza barthii42.8911.3491.33196reverse complement

Expression of CNT30103824

Peptides detected in this lncRNA

>peptide 1 (44 aa)
LQLHLRLRPPSPTESTSNQPTHPSYRSVHPVMHAYVALNSTPTP*

>peptide 2 (37 aa)
SSFISGSGPRLLLNQLAINQRIHRIDPSIPSCTRTWH*

>peptide 3 (61 aa)
MCKTICIHKSIFNNKSNDRKKINNYLNFLNKTNDQTVLKKVNGVKHFRMKVVLKSPQWYAQ*

>peptide 4 (46 aa)
MFDIVDFFKHVCSFYSKTFVICVKLYVYIKVYLTINQMIEKKLTIT*

Sequence

>CNT30103824
CTCCAGCTTCATCTCCGGCTCCGGCCCCCGTCTCCTACTGAATCAACTAGCAATCAACCAACGCATCCATCGTATAGATCCGTCCATCCCGTCATGCACG
CGTACGTGGCACTAAATAGTACTCCTACTCCGTAAATATTTCCTCATTCCCTAGATGTTTGACATCGTTGACTTTTTTAAACATGTTTGTTCGTTTTATT
CAAAAACTTTTGTGATATGTGTAAAACTATATGTATACATAAAAGTATATTTAACAATAAATCAAATGATAGAAAAAAAATTAACAATTACTTAAATTTT
TTAAATAAGACGAACGATCAAACAGTTTTGAAAAAAGTCAACGGCGTCAAACATTTTAGAATGAAGGTAGTACTAAAATCACCGCAATGGTACGCACAAT
AAGATGAGCAGATAATTGGGACATACGTACGTTCGTACACCTGCTAGTTGCGCTGCT