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Detailed information on CNT30103809


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697150Oryza rufipogonOryza sativa50.21100100365forward
CNT3086234Oryza rufipogonVigna radiata23.3832.0883.53170forward
CNT3041219Oryza rufipogonChlamydomonas reinhardtii29.7137.8992.13216forward

Expression of CNT30103809

Peptides detected in this lncRNA

>peptide 1 (73 aa)
DFNAIDTTLRSRGFVLRQTTNLDIKDATKKVHINNTGHSSESYKQTLHNRKANVFQNQTHKLIDRSPHGQIIG*

>peptide 2 (63 aa)
MPHLNPVGHQSTNWMVRFVLMVATAAFTSLGTTSPRYIRQHAMYLPWRCWPSRPRSPGRRRKA*

>peptide 3 (36 aa)
MSMRENTSTTLVELEIMHTALCTLARSPPGTTLGGW*

Sequence

>CNT30103809
GATTTCAATGCTATAGACACAACTTTACGAAGTAGAGGCTTCGTTTTACGACAAACCACGAACTTGGATATTAAAGATGCCACAAAGAAGGTTCACATAA
ACAACACAGGTCACAGCAGCGAAAGCTACAAGCAAACCCTGCATAATCGAAAAGCAAATGTTTTTCAAAACCAGACACACAAACTGATAGATAGAAGCCC
ACACGGACAGATCATAGGATAGCAGCAGTAATCAAGCATTGCCAAGGCACCAGGCAAGAACCCTGAACCTCTCTAGTACTCGTCACCCTCATCACCCTCG
TCACCATCGTCGAACTTGATGTCGATGCGGGAGAACACCTCGACGACGCTGGTGGAGTTGGAGATCATGCACACGGCCCTCTGCACCTTGGCCAGGTCTC
CCCCCGGGACGACGCTGGGCGGCTGGTAGTTGATGCCGCACTTGAACCCCGTGGGGCACCAGTCCACGAACTGGATGGTGCGCTTCGTCTTGATGGTGGC
CACCGCGGCGTTCACGTCCTTGGGGACCACGTCGCCGCGGTACATCAGGCAGCACGCCATGTACTTGCCGTGGCGCTGTTGGCCTTCTCGGCCGAGATCA
CCGGGGCGTAGGAGGAAAGCATGAAGTGGATCCTCGGGTAGGGCACCAGGTTGGTCTGGAACTCGTTGACATCCACATTCAGAGCACCATCGAACCTCAG
GGAGGCAGTCAGTGAGGAGATGACCTG