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Detailed information on CNT30103741


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696470Oryza rufipogonOryza sativa5037.63100263forward
CNT30671914Oryza rufipogonSetaria viridis100.1931.6995.26527reverse complement
CNT30524650Oryza rufipogonSetaria italica100.1924.4995.26527reverse complement
CNT30292784Oryza rufipogonTriticum aestivum80.0414.0496.2421reverse complement
CNT30221833Oryza rufipogonHordeum vulgare56.6521.8395.3298reverse complement
CNT30401406Oryza rufipogonTriticum turgidum80.4214.4596.22423reverse complement
CNT30555751Oryza rufipogonOryza glaberrima81.1859.8997.42427forward
CNT30441792Oryza rufipogonAegilops tauschii77.3865.3394.84407reverse complement
CNT30258698Oryza rufipogonAvena sativa21.6714.1191.23114forward
CNT30670388Oryza rufipogonTriticum dicoccoides80.4215.0995.98423reverse complement
CNT30140161Oryza rufipogonLolium perenne80.4212.4395.98423reverse complement
CNT30688988Oryza rufipogonTriticum urartu80.4221.7696.45423reverse complement
CNT30346086Oryza rufipogonEragrostis tef77.7653.9696.82409reverse complement
CNT30362056Oryza rufipogonSorghum bicolor47.5360.6892.4250forward
CNT30595568Oryza rufipogonOryza meridionalis67.1190.9896.6353forward
CNT30106724Oryza rufipogonOryza longistaminata54.7532.497.57288reverse complement
CNT30499372Oryza rufipogonDigitaria exilis98.8615.395.38520reverse complement
CNT30603680Oryza rufipogonOryza punctata10013.3397.15526reverse complement

Expression of CNT30103741

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MKKARTEIRKEGVRQDDFGSHVKVLRKVSTGARSRSRHVRPLGRVFAHF*

>peptide 2 (46 aa)
ALVYSTCSPVSVWGTVSSPGGSPSQFEVFSKKFQPSLTMTIVATDY*

>peptide 3 (34 aa)
MFARWAECSPTSESSPLERNPCPPQQENGCALLY*

>peptide 4 (50 aa)
RPSILYLFTCVGLGYGQLTGRIALAIRSFFQEVSTVVDYDNSRDRLLRSS*

Sequence

>CNT30103741
CGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGCTCACCGGGAGGATCGCCCTCGCAATTCGAAGTTTTTTCCAAGAAGTTT
CAACCGTCGTTGACTATGACAATAGTCGCGACCGACTATTAAGATCCTCGTGACTATGGAAGGGCGGTACGCTCTGCTCTCTCGCGACCTCTAGTCTAAT
CAAAAGACTAAAGGCCCCTACGGAAGATGAAAAAGGCAAGGACTGAAATAAGAAAGGAAGGAGTTCGGCAAGACGACTTCGGTTCACACGTGAAAGTGCT
TCGAAAGGTGTCAACAGGTGCGCGGAGCCGGAGCCGGCATGTTCGCCCGCTGGGCCGAGTGTTCGCCCACTTCTGAGTCTTCGCCTTTAGAGAGAAATCC
GTGTCCGCCCCAGCAAGAAAACGGCTGTGCGTTATTGTACTAACGCGCGACGAAGCAAGAAAACGTATGCACGTGTACGGAAGCGCAATGGCTTTCGCAC
TCATCCCTTGCTTCAAAACTACAGGT