CANTATAdb - search

Detailed information on CNT30103740

BLAST search results

BLAST vs Swiss-Prot:
sp|P14009|14KD_DAUCA, E-value = 4e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696384	Oryza rufipogon	Oryza sativa	82.31	96.41	99.59	484	forward
CNT30555190	Oryza rufipogon	Oryza glaberrima	100	90.32	99.66	588	forward

Expression of CNT30103740

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MRNKKKYNDHSATNGSRTIESKEKKSKKLTTHQDIGGKNNIKIQYSQPWSDQVQH*

>peptide 2 (33 aa)
MRLRSMGRLSLMPSTLAHTCSFSASRGHDDPPP*

Sequence

>CNT30103740
TTCCAATCTCTGACCATTGCATATATGCGACAAAAAAATACATTTCCATTTTATTGACGAAACTATAACAAATCATGAGAAACAAAAAAAAATACAATGA
TCATAGCGCTACCAACGGATCACGAACCATAGAATCAAAAGAAAAAAAAAGCAAGAAATTAACAACACATCAAGATATTGGGGGTAAAAACAACATCAAG
ATACAGTACTCCCAGCCATGGAGTGATCAAGTGCAACACTAGCTCTCTAGATCTCGATCTAGTGCACGCACTGGTAGTCGGATGGGCAGATCTTGCCGCA
GTTGTTGAGGATGAGGCTGAGGTCGATGGGGAGGTTGAGCTTGATGCCCAGCACGTTGGCGCACACGTGCAGCTTCAGCGCGTCGCGCGGGCACGACGAC
CCGCCGCCGTAGTGAGGCGTCGGCGGCTTCGGCCTCGGCGCCGGTGGCTTCGGCGAAGGGCAGTCCGGGCAGGCCACGGCCATGGCCACCACCAGGAGGC
TCACCGCCAGCACAAGCGCCGCCTTCGCCGCCATTGCTGCAACTAATCGAGCTAGTGTAGCTAGCTAGTAGCTCGAGCTTGCTGCTGC