Detailed information on CNT30103734


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696520Oryza rufipogonOryza sativa10091.0499.34752forward
CNT30555063Oryza rufipogonOryza glaberrima82.8591.3599.52623forward
CNT3068141Oryza rufipogonLeersia perrieri20.2136.4580.92152forward
CNT30596955Oryza rufipogonOryza meridionalis72.4777.396.51545forward
CNT30106908Oryza rufipogonOryza longistaminata33.6410097.23253forward
CNT30577979Oryza rufipogonOryza barthii10094.3598.8752forward
CNT30117704Oryza rufipogonOryza nivara83.7893.89100630forward

Expression of CNT30103734

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MFHLHAHLHYHLSRHETWAKTKLCSRPSLPLLQQGILSHIWLHY*

>peptide 2 (82 aa)
MNKRRFSTHSLILVTVLAVLIVLAMPTALLGLSIGRRALGDPHGVQSTAAMQQDAQAVGPACNTNDPNVPSPCPPPLSPLSP*

>peptide 3 (37 aa)
MNLASRQESSCYLFSVLRSMQAVPYNLGEVLPCLRGT*

>peptide 4 (36 aa)
MLKAFASFAPAGDFEPYMVTLLGDKAIRLYHENYDK*

>peptide 5 (32 aa)
MPTSTITSLAMKPGQKQSYAQGLRFLCSSRGF*

Sequence

>CNT30103734
AAACCAGCTAAGCATAAGGTGAAGGGTAGATAAAATACAACGGTGAAGTTAAAAGAGAAACAGAGATGAACAAGCGAAGGTTCTCTACACACTCCCTTAT
CTTGGTGACTGTGCTAGCAGTTCTAATTGTTCTTGCTATGCCAACAGCTTTGCTGGGGCTCAGTATAGGGAGGCGTGCTTTGGGTGATCCACATGGAGTT
CAATCCACAGCTGCCATGCAACAAGATGCTCAGGCCGTAGGTCCTGCGTGCAACACAAACGATCCGAATGTTCCATCTCCATGCCCACCTCCACTATCAC
CTCTCTCGCCATGAAACCTGGGCAAAAACAAAGCTATGCTCAAGGCCTTCGCTTCCTTTGCTCCAGCAGGGGATTTTGAGCCATATATGGTTACACTATT
AGGTGATAAAGCTATACGTTTGTACCACGAGAACTATGACAAGTAAACGTATAGATTAACCAACATCTGAATTGTGACGAGAATTCGTACGTTCTTTCAG
AGAATGTTGTACCTTGTGTTATATGGTGCATGTACCTCTATATAGTTGTGTTTGAATAAAACGAAGACATGAATTTGGCGAGCCGACAGGAGTCATCTTG
TTATTTGTTTTCTGTACTACGAAGTATGCAGGCTGTACCATATAATTTGGGAGAAGTTTTACCATGTTTGCGAGGTACATAGAGGTATTGAATTGAGAAG
TTTAGCTATGTAGACAATTGATCGAGAGAGGGGTAAGGTATGGGAATGAATT