Detailed information on CNT30103728


BLAST search results

BLAST vs Swiss-Prot:
sp|P0C2Y3|ACCD_ORYSI, E-value = 4e-68

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690840Oryza rufipogonOryza sativa89.9122.5899.331043forward
CNT30225530Oryza rufipogonHordeum vulgare16.927.890.82196forward
CNT30554212Oryza rufipogonOryza glaberrima89.9127.6599.421043forward
CNT30369217Oryza rufipogonOryza glumipatula12.0721.6497.86140forward
CNT30149435Oryza rufipogonBrachypodium distachyon6.2124.3297.2272forward

Expression of CNT30103728

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MEFRESMILIIRSLLNVSTMGPDSIAVQSEMKDFSLLIGVVN*

>peptide 2 (33 aa)
LFRIQNLFRLLPSTCNTYSTTLGPHKSAVRIDT*

>peptide 3 (31 aa)
PISNPKSFSSTSFHMQYLFNHSRTPQIRCKD*

>peptide 4 (29 aa)
MTLAFRRILVSCSEVLLVRPRAKMDYIRI*

>peptide 5 (54 aa)
MKIPDDLSFSTNPRLVQRSPVSKTPRKNGLYKNIIPNIPPGAYSSIAIPNLFSL*

>peptide 6 (39 aa)
MRGKGGKIAYSIKGQILLPTTDLILPLRLCKAIYHPQRV*

>peptide 7 (36 aa)
MSSFLKESLRKGSNFQTLSFFIHSPLFFSLSRSGIE*

>peptide 8 (35 aa)
MKTFSVNSAYLIPLSYDNTIFIFIYCIIPLYLLNI*

Sequence

>CNT30103728
CCTATTTCGAATCCAAAATCTTTTTCGTCTACTTCCTTCCACATGCAATACTTATTCAACCACTCTCGGACCCCACAAATCCGCTGTAAGGATTGATACA
TAGGACTTTTAGTTGATTGATATTGCCGTAAAGTTGAAACTTTTTTAGGCTTTTTTATTAAACTGTAATTTCCTCTCTGCATACGTGCTCTTCTAGAAGC
ATATACAATAATGCGCGGTAAAGGAGGGAAAATAGCATACTCAATCAAGGGACAAATTCTTTTACCTACTACAGATCTCATACTACCCCTTAGACTTTGT
AAGGCCATATACCACCCCCAAAGGGTATGAAAATACCGGATGACCTTAGCTTTTCGACGAATCCTCGTCTCGTGCAGCGAAGTCCTGTTAGTAAGACCCC
GCGCAAAAATGGATTATATAAGAATATAATTCCGAATATTCCTCCGGGTGCGTATAGTAGCATTGCGATTCCGAATCTTTTTTCTTTGTGAATAGAAAAA
ATTCATTGTATCGTTGGGTCGGAGGTTTGCTCCAGAAAAATTCGGAACAAAACGTCTACCGCGTTGAAGCCCATAGCCCCATGGAGTTCCGCGAAAGTAT
GATTCTTATCATCAGGAGCCTTTTGAACGTCTCTACGATGGGTCCAGATTCTATAGCAGTCCAATCTGAAATGAAAGACTTCTCGCTCTTGATCGGAGTC
GTAAACTAAAACTACCTCTTCATCAAGGTTATAGAAAACTTCGTCATCTAGTTCTACCATTTTGAAAATCAATTCTCTTTTCTTACGAGCATTTCGAGTC
ACTTGTTGACTCACGATTGTGCCTGTTAAAAGTTTCAAAATGTCCTCTTTTTTGAAAGAGAGTCTTAGAAAGGGGTCTAACTTCCAAACTCTGTCTTTTT
TCATTCATTCTCCTTTATTTTTTTCTCTATCTAGAAGTGGAATAGAATAACCCGGTTGAAGGGTAATGGTCATACGTTTGTAATGCATTGTATGTCATTG
ATTCTTTCCCAATAAATGAAGACTTTTTCTGTAAATAGTGCGTATTTGATTCCATTATCATATGATAATACTATATTTATATTTATTTATTGTATTATAC
CTTTATATCTTCTAAATATATAGAATAGAGGAATCCCGATTTGTCAAGTCTCATGATCGT