CANTATAdb - search

Detailed information on CNT30103692

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LPX2|PPR39_ARATH, E-value = 8e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696412	Oryza rufipogon	Oryza sativa	19.84	23.76	99.09	439	forward
CNT30110651	Oryza rufipogon	Oryza longistaminata	8.27	24.9	86.34	183	reverse complement
CNT30575911	Oryza rufipogon	Oryza barthii	8.31	30.02	90.22	184	reverse complement

Expression of CNT30103692

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MFKNETDHDTECPRIKLKTHRAQVVKHLWNAS*

>peptide 2 (32 aa)
MKITSREAVEPEFYLWILPYQNSTKEAFSSLS*

>peptide 3 (53 aa)
MYSPKYNNFSTNILFPTNHNPPPFTFPTYLHYSCNHNPPLLTSTYFLNNRVQL*

>peptide 4 (31 aa)
MLSSFIPCLRMRQIMILNVPGLSSKPIEHRL*

>peptide 5 (31 aa)
MPPSPSPTLATTIFSFKATDQVVNKVFTAAS*

Sequence

>CNT30103692
GATCAGTTCGGAGCAGTTGGCCTTGATGCAGCGGAGTCCCCTACGGACGGGAGGCCTTGATCTTGCCCTCCACTGAGTATGCCTTGTAGCTCACCACGCG
CCGTCCCCTCCTCTCTGGGTCACTGAAGATCTGGGGGATCACATGCCACCATCACCGTCACCAACCTTGGCCACTACTATATTCTCCTTCAAAGCAACAG
ATCAAGTGGTCAACAAGGTATTCACTGCAGCTTCATGAAAATTACAAGCAGAGAAGCAGTAGAACCTGAATTTTATCTGTGGATCCTTCCATACCAGAAC
AGCACCAAAGAAGCATTCTCTTCACTCTCTTAAATGCTCGCACAACAAAACATGGTCAAAGGAGCTTCCACTAGCATTCAAACTTCATAGATACAATCAT
TTAATCAGAATATTTGCATTAACCCTTCTTTATAAGACTAGCAAAATGCATTTGCGTTGTTACGGAATTAAAAATCATAACAGCACAATGCAGAGAGGAA
ATCTATTTTGAATCCTAGAGCTTAATTTTAGAATTAATTTGAGTTTTTTGCTTGCCAAGTTTACGCTCCATTTGTTATTAACTCGCAAGGATGATTATGG
TTGAGAGCTCCATGGTCTGTCCGTGATTTCCACTGTTCTATCATACAATTGGTTTGGAGAAGGGATTGACAGTGATCCCACATGTCTTGGAGAAGGGATT
GACAGTGATCCCACATGTCAGAATTTTGAGAGTTGGTGGTGGGGTGGTGGCAGATTCACCACTCACCACCACCACTACTCCTTTTAAAGTAGTATAGATT
TACAGCTATTATCTGTGGGTAGCCAAAAGATTATAGAGACAAAGAAATCATGCTGTCATCCTTTATTCCATGTTTAAGAATGAGACAGATCATGATACTG
AATGTCCCAGGATTAAGCTCAAAACCCATCGAGCACAGGTTGTGAAACATCTTTGGAACGCTTCTTGAGCACAACAGTATTGTTCTAGAATAATAATGTA
CTCCCCAAAATATAACAACTTCTCTACCAACATTCTCTTCCCAACCAATCACAACCCTCCACCATTCACTTTTCCCACCTACCTCCACTACTCATGCAAT
CACAACCCTCCACTACTCACTTCTACCTACTTTCTTAATAATCGTGTCCAACTCTAAAACTTCTTATATTCTGGGACAGAGGGAGTATGTGGTGTTATCC
ATCTCACTCCTTGCTGCCTCACACAGGTAAATAGAAACATCATTCCATCAGATATTTCATGATTAGTACATGTGCATAATAATACGTTGAGATAAGATAA
TCAGATCGGAAACCATTCTATACAATCCAATCTTGTTCCATAAAAAATATATTGTGATGATCAGTACTGCATTTGGTAAAGAACAAAGCTTCAGACATAT
CTTTTGTTCAGTTAAAAAACAAGTCAAACTATTCAACACCTAAACAGTACACATAGATGAAATTTAATGAAACCCTATAAATTGTTTTGGATCTAATGTC
AAAACTACTGCCTAGACACATTAAGTTTGAAACTCCAGTCACAAATCCCTTTATGATCCGTTAGTAGAGATAACGACAAACTTTTATGTTTTTTCTGGCA
TCAACAGCATAACATAATTGCTTGTTTACAGTCTAGGAACCACAGTAAAAATAATTCGGAGAGGTGGCATACATACCTCGCTATTTACACATACAGAGAA
GATCCCTCCTCTAATCGGACTGTAGGAGAAAAGAATTCCAACACAGAATTTCAAAGCTGCAAAATGCTTCAGCAGCTCAAAGATTCTATAAAGGACTTGT
ATTTTTCAGGGAGAAACCTATAATATTCTTGATATTTTCCCCCAGACAAAAGATCTATAAACAAGGAAGCAGTGGATGCTTCGAGGGAAAAGTGCTTCTC
ATCAATCATGGAAAGGTAAGTGCCAGCCCTGGTTATCTCACCTCTCTGCAACAGTTCCCTAACAATGAAATTTAGCATGCCAGAGTCAACAGTACAGCCA
TTGTCCTCCATTGAAAGAAAGAGTTGATCCAATTCTTCTAGCAACCCCTGTCCTATAATATTTTCAGCCATCAACCTGTACGTCCAATAATTCGGCACTA
AACCGTTAGACGAGAAAGCAACAAACAAATCCTTGGCTTCATCATTTCTGCCAACTTTAAGCAATGCATCAATCATAATGTTGAAAGTCCTAGCCTCAAG
CTTCAAATCCATC