CANTATAdb - search

Detailed information on CNT30103646

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002948, E-value = 8e-145

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30523179	Oryza rufipogon	Setaria italica	24.16	67.75	91.98	187	forward
CNT30596024	Oryza rufipogon	Oryza meridionalis	32.69	94.05	98.81	253	reverse complement
CNT30370879	Oryza rufipogon	Oryza glumipatula	29.84	100	98.7	231	reverse complement
CNT30646316	Oryza rufipogon	Cannabis sativa	10.21	20.73	87.34	79	reverse complement

Expression of CNT30103646

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MGDRPGNSSRVHTSEDKVCRKDMCWSVRAVYDL*

>peptide 2 (36 aa)
KINRILISTSCNFFSGSQSPKNSRVKRAWPGAIWDG*

>peptide 3 (54 aa)
MKAIRCKWARPGGRRDVTKWYQNSMAHALALDTWTWLREDVPGLGLIDGGVDLS*

>peptide 4 (67 aa)
RLIEYSYQQVATSFPEANLQRTPGLSVLGLEQFGMGDRPGNSSRVHTSEDKVCRKDMCWSVRAVHDL*

Sequence

>CNT30103646
TAAGATTAATAGAATACTCATATCAACAAGTTGCAACTTCTTTTCCGGAAGCCAATCTCCAAAGAACTCCAGGGTTAAGCGTGCTTGGCCTGGAGCAATT
TGGGATGGGTGACCGACCGGGAAATTCTTCCCGGGTGCACACGAGTGAGGACAAAGTGTGCAGAAAAGACATGTGTTGGTCTGTGAGGGCAGTCCATGAC
CTATGAAAGCTATCAGATGTAAGTGGGCCCGGCCTGGGGGAAGGCGGGACGTTACAAAGTGGTATCAGAACAGCATGGCACATGCGCTGGCACTGGACAC
ATGGACGTGGCTAAGAGAGGACGTTCCTGGCCTAGGGTTGATCGACGGGGGCGTCGATCTCTCTTAAGGGGGTGAGGGTGTAACATCCCGGACTAGAACT
TAATAGGATTAATAGAATACTCATATCAACAAGTTGTAACTTCTTTTGCCAATCTCCAAAGAACTCCAGGGTTAAGCGTGCTTGGCCTGGAGCAATTTGG
GATGGGTGACCGACCGGGAAATTCTTCCCGGGTGCACACGAGTGAGGACAAAGTGTGCAGAAAAGACATGTGTTGGTCTGTGAGGGCAGTCTATGACCTA
TGAAAGCTATCAGATGTAAGTGGGCCCGGCCTGGGGGAAGGCGGGACGTTACACTTAGTTTGGCTTGCTGCTGAGAATACTGAGTTTAGTGCTCCCATTG
TCGATGGTTTTATTTTTGCTGAAATACCTGATGTGTTGACTGATCCTTTAGGTTATGCTTTAGTTGATGAATTT