Detailed information on CNT30103641


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30202140Oryza rufipogonPisum sativum29.3618.6989.11202forward
CNT30390237Oryza rufipogonTriticum turgidum98.9831.5192.51681forward
CNT30446760Oryza rufipogonSaccharum spontaneum53.6332.6895.93369forward
CNT30689226Oryza rufipogonTriticum urartu98.8436.6893.24680forward
CNT30359977Oryza rufipogonLactuca sativa29.2211.2688.56201forward
CNT30575481Oryza rufipogonOryza barthii29.838.18100205reverse complement
CNT30116349Oryza rufipogonOryza nivara29.5180.56100203forward

Expression of CNT30103641

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MKFLIRSSDLIYLINGSTTKPPFSEKGEWSYSNSKRFVIFNQFCASI*

Sequence

>CNT30103641
TTTTTTTAAGAGTATAAGTCCCTATCTATATCTACTTTCCTTGAGCATAATATAGATTTTTTTATTCGATTCCAAATTCCAAGATAACTCATTAGAATTA
TTAATAAGATGGTCCTGATATATTAGCAATATTTATATTGCCCCTTTTTATTCGCTTTATTACTTCTATTCTAGACCCTATCGTTTATCCTTATGAAATA
TAATATAAAATAGAAGGCAGAGGAAAGAGATATAATGAAATTCTTGATTCGATCTTCCGACCTAATTTATTTGATTAATGGATCAACAACCAAACCCCCA
TTTTCTGAAAAAGGAGAGTGGTCTTATTCAAATTCAAAGCGCTTCGTAATCTTCAACCAGTTCTGTGCTTCAATATAATTTCCCGGAGTAAGCGCTATAG
CTTGTTTCCAATACTCAGCAGCTTGATCAAACCAAGCTTCTGCAATTTCTGAATCACCCTGTAGAATGGCCTGTTCTCCCCGGTCGGAATAGGTAGTTCC
TTCCCCTAGAACCGTACTTGAGAGTTTCCTACCTCATACGGCTCAGAAATTGCTATCTTAATTTCCCTTGTCTTAACTGAATTCGATTTCTCAAAAATCG
ATCCAATTTCTTCTTGGGTTACGCAGAAGAAGTTAATTACCTAAGTTTCAAACCCTAAATTTTGATCAATAATCAGTTTGATCTTTTC