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Detailed information on CNT30103638


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000779, E-value = 3e-163

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30577809Oryza rufipogonOryza barthii39.1742.8299.44358forward

Expression of CNT30103638

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MFPRFDRSIMAPRRSRRPSMALPPPPQAGAWGT*

>peptide 2 (58 aa)
MAGSTPRCAAARSIAASARRRRRGGPPRGARRTRQTCRPRRWPSSRTRRCYGGANAED*

Sequence

>CNT30103638
TTTTAGTATGCATCCAATAAAATTAATTAAGCTAGCTAAGCTAGTAGCTAGGTATCCATTCAATCCGGCAAACATGTAATCACATCATAGAGAACAGAAG
CTTTTATTTATATCTGAATAGTTAAGCTAGCAGGCAGGCAACAGACCAAGCTTCAACAACGCTAGAAGGGCAGTAATTAACTAGCTCGAGTAGCCGGTGT
GAAAAACACACAAAGAAACGAAGCAATTAAACCAGCTAGTACTCATGTTTCCTCGCTTCGATCGATCGATCATGGCGCCGCGGCGAAGCCGGCGACCATC
TATGGCTTTGCCTCCACCTCCACAGGCGGGAGCTTGGGGAACTTGAGGAATGGATTCTTCTTGATCAATGGCAGCAGCTTCTTGAACAGCTCGGGGTCAG
CCTCCGCGTCGTCCTGCATCGCCACCTTCTTCTCCTCCGCCGGCGGGTGGTAGATCGGCGGCGACGGCGAGTACACCGGCGGCGCCGGGTGCGTGTACGA
CGGCGGCGGCTTGTGGTACGCCGCCGGCGCTGGCGGCGACGGGTTCTTGTAGTGGAAGAAGAAGTCCTTCTTGTGGAACGGGTCGCAGAGGAACGCCGAC
GCGCACTCCGACGACGGGAAGTGGGTGTCGCCGGCGACGGCGACGAAGGTCTTCTTCTTGTCGGCGGCGGCGTTGACGATCCACGACGGCTCCTGCCCGG
GGCATGGCTGGTTCGACGCCGCGCTGTGCAGCTGCGCGAAGCATTGCTGCCTCAGCTCGCCGTCGTCGCCGAGGAGGTCCGCCGCGAGGGGCACGGCGAA
CGCGCCAGACTTGCCGACCTCGCCGGTGGCCTTCGTCTCGTACTCGCCGTTGCTACGGCGGCGCAAACGCCGAGGACTAGAGCCCTTGGCAGAGCCCCCA
TTGCTGAAGCTCAC