CANTATAdb - search

Detailed information on CNT30103636

BLAST search results

BLAST vs Swiss-Prot:
sp|P32295|ARG7_VIGRR, E-value = 7e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696798	Oryza rufipogon	Oryza sativa	71.89	101.37	98.65	445	forward
CNT30116592	Oryza rufipogon	Oryza nivara	65.91	70.1	98.77	408	forward
CNT30604652	Oryza rufipogon	Oryza punctata	48.3	81.92	90.3	299	forward

Expression of CNT30103636

Peptides detected in this lncRNA

>peptide 1 (43 aa)
RISIKVYCIIDVFQEVDVQAKKKDKKNKTRIKLLRRITLSLHF*

>peptide 2 (31 aa)
QGYRSKYTVLLMCFKKWMYKQRKKIKKIKLE*

>peptide 3 (86 aa)
MEMMEGSGAEATGEAGEVEESRSRRWEAAAPWRSWTMRCSTWTKRSTRQGMAMAPRCAKPYSRSASSSSAPKSGCLRWASGTANRRC

Sequence

>CNT30103636
CAAGGATATCGATCAAAGTATACTGTATTATTGATGTGTTTCAAGAAGTGGATGTACAAGCAAAGAAAAAAGATAAAAAAAATAAAACTAGAATAAAGCT
ACTAAGAAGAATTACTCTGTCTTTACACTTTTGAGATCGATCTCAATTTTTCGTCGTCATCAGCATCGAATCCGTCCTCCGATTCTCCCGTCCACAAACC
CAATCGAAATCCATCCCCAACAAACCGAGAGATCGGAGGACGAAGCAAAAGGAAACCAAAAAACTAGCTAAACTAAGTAATTAATCGACCAACCAACCCT
GAAGAAGAAGAAGAAGAGCAATCTGGGAGCTCCGCTCCACCGCCATGGCGATGCATCCATGGAGATGATGGAAGGATCAGGCGCGGAAGCAACCGGCGAA
GCGGGGGAGGTGGAGGAGTCGAGGTCGAGGAGGTGGGAGGCGGCGGCGCCGTGGAGGTCCTGGACGATGAGGTGCTCGACGTGGACGAAGCGGTCGACGC
GGCAGGGGATGGCGATGGCGCCCCGCTGCGCGAAGCCGTACTCGCGCTCGGCCTCCTCGAGCAGCGCCCCGAAGAGCGGGTGCTTGAGGTGGGCGAGCGG
CACGGCGAACCGCCGCTGC