Detailed information on CNT30103549


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30309159Oryza rufipogonTriticum aestivum30.636.682.78209forward
CNT30220948Oryza rufipogonHordeum vulgare30.4524.582.21208forward
CNT30252009Oryza rufipogonAvena sativa27.6719.0584.66189forward
CNT30659258Oryza rufipogonTriticum dicoccoides25.4882.0883.33174forward
CNT30110710Oryza rufipogonOryza longistaminata64.5710092.97441forward
CNT30117705Oryza rufipogonOryza nivara98.39102.1396.13672forward
CNT30592763Oryza rufipogonEragrostis curvula22.2517.8280.92152forward

Expression of CNT30103549

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MQSELWRSASRGTLKAPVLSSFPAALLSYSPLPFLHLIATWR

>peptide 2 (93 aa)
MLTSINCRSYSSVLRRRAWVVVLRLGRHGLLVEVIEEVLLLLVDVVEEWVLRLRLRLGWLRLRLWLGWHWLLVEVVYDLLFNGTADGRRCAQR*

>peptide 3 (83 aa)
MFGMIKHANVHQLQIIFISSSPEGLGCGTQAWAARASCGSDRRSASPSCGCGRGMGAPAQASAWVAPASALAWVALASCGSGL*

>peptide 4 (30 aa)
MAPGRGMARWWRCGAERCNRSCGGRRQEGR*

>peptide 5 (52 aa)
MWSRNGCSGSGFGLGGSGFGSGLGGTGFLWKWSMIFFLMGPQMVADAHNADG*

Sequence

>CNT30103549
CACCAAATCTGGCTAATTGTAAATAAATTATTTTACCATATATAATTTCATTTGGGAGAGAAAAATATGCAAATAGTACAAACATCCCTGCTGATGCCCG
ATAATCAAGTAGAAATTACACTCCTGTGCTGAGCAGGATCATCATGTTCGGCATGATCAAACATGCTAACGTCCATCAATTGCAGATCATATTCATCAGT
TCTTCGCCGGAGGGCTTGGGTTGTGGTACTCAGGCTTGGGCGGCACGGGCTTCTTGTGGAAGTGATCGAAGAAGTGCTTCTCCTTCTTGTGGATGTGGTC
GAGGAATGGGTGCTCCGGCTCAGGCTTCGGCTTGGGTGGCTCCGGCTTCGGCTCTGGCTTGGGTGGCACTGGCTTCTTGTGGAAGTGGTCTATGATCTTC
TTTTTAATGGGACCGCAGATGGTCGCCGATGCGCACAACGCTGATGGGTAGTGGGTCTTGCCGGCGACGGCGATGAAGGTGCCCTCCGACATTGGCACGA
TCTTGGATGGCTCCTGGCCGGGGCATGGCTCGTTGGTGGCGCTGTGGAGCTGAGCGATGCAATCGGAGCTGTGGAGGTCGGCGTCAAGAGGGACGCTGAA
AGCGCCGGTGCTGTCAAGCTTTCCAGCGGCCTTGCTCTCGTACTCGCCATTGCCGTTCTTGCACTTGATCGCCACCTGGAGAT