CANTATAdb - search

Detailed information on CNT30103544

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT007125, E-value = 2e-57

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30696504	Oryza rufipogon	Oryza sativa	15.38	99.57	100	232	forward
CNT30596805	Oryza rufipogon	Oryza meridionalis	6.1	23.47	98.91	92	reverse complement
CNT30369867	Oryza rufipogon	Oryza glumipatula	9.22	22.31	96.4	139	forward
CNT30104980	Oryza rufipogon	Oryza longistaminata	5.9	21.71	89.89	89	reverse complement

Expression of CNT30103544

Peptides detected in this lncRNA

>peptide 1 (59 aa)
MRISCHERFCSRYSAMVCLSCCPEHAAILHPGTNAVTVEVVALRQESFFQSSTCPVSCI*

>peptide 2 (29 aa)
MPKIRGWVVIGQDSKGQARSKHLDNARKR*

>peptide 3 (29 aa)
MPLRLPIASRYNFCSPKSKAFLLLGNWNR*

>peptide 4 (40 aa)
MSRFINIYMNVDNARKSYNMKRRKYLFIGIDVNAFFSNFG*

>peptide 5 (34 aa)
MRGFVPATQPWFVCPVVRNTPPSFTLAPMLLQWR*

Sequence

>CNT30103544
CTCCGTTTTAGGTTATAAGACTTTCTAGCATTACCCACATTCATATAGATGTTAATGAATCTAGGCACACATATATGTCTAGATTCATTAACATATATAT
GAATGTGGACAATGCTAGAAAGTCTTATAATATGAAACGGAGAAAGTATTTATTTATTGGAATAGATGTCAATGCATTTTTCTCTAACTTTGGTTAAAGT
TAATTTCCTGCTAAACTGGGCGGTTTGGTTAAAGTTAATTTCCTGCTAAACTGGGTAGTGGGACATATGTCTCAAGCAGTGATGCACGAAAAATTCCTCA
TATAGGCAGCTCAATTGATTAAAATTTATGTTGACAAGTTCTGCACCAATTGCCAGCTTTGGTCGCATTGTACCACCGCTACCTAAACAAACAACTAATA
GAATTTAGTGATGCTTTTACGTCATACAGCGGAATTCAGCGGACATCCAAATCATAGAAGAAATCAAGAAGTATGACATTAGTAATAATACTTTGATCCA
AACTTTACAGTAGCGAAGCTAGAATATCAATTTGAAAGGGGTAACTTACTGAGTAATAATAATACTTATAAGTTTTAACTAGTTAGTTTAACATTTTATA
ATAGTTTTTTTCTCGTCTCTGCCGATAGACTCTTTTCTTCTTCCTCGCCTCTCCTTCTTCCTCCCGTCCACCCCGATCGTCTTTCTTAATTTCTTCACCT
CCTCTTCAACAAAAATGGATCTTTCTCCCTTCATAGAACAGATTTTGCATGAGGATTTCGTGTCATGAGAGGTTTTGTTCCCGCTACTCAGCCATGGTTT
GTTTGTCCTGTTGTCCGGAACACGCCGCCATCCTTCACCCTGGCACCAATGCTGTTACAGTGGAGGTAGTTGCGTTGCGGCAAGAATCTTTCTTTCAATC
ATCTACATGTCCTGTCTCATGCATCTGAACTAACTCCACATGTTTCCTTCTTTTTGACATATTTTCATTGTTAATGGTTTTCCTGTACTGAGCCATCGAG
ATGCCAAAAATAAGAGGATGGGTTGTAATTGGACAAGATTCAAAGGGTCAAGCACGAAGCAAACACCTAGATAATGCTAGGAAGAGATAGGCTGAGGAAA
ACACTTTCGGGTCTGAGGGAGAAATGCCGCTGCGATTACCAATAGCGTCAAGATACAACTTTTGTAGCCCGAAATCCAAGGCATTTCTTTTGCTTGGAAA
TTGGAATCGTTGAATCGAGTTCAATTTGTTGTAGAAAGAGTCCTGATTTCATTCTGTTGCGGAGGTACAACGGGGCCGGAGCTGGCAGACAGTGCAAAAA
CTCGTAAACTCGAGTTATAATCAAGAACATTTAAAAGACCGGTTCTGTTTGACATGCAAGCTCAGCTTCAGCTCACAGAAGTGTTTGGACCATAGGCTTC
ATCATCCAGTTAAAGAGCGAGATAACCTTGTGGTGTTGGAGATTGTGATGGAAGATGGATGGAGTGTCAATGTCTTATCTCTGGGGAACAACTCCCAATA
GGTTCTTG