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Detailed information on CNT30103542


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENW2|YCF3_SACOF, E-value = 3e-86

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30529029Oryza rufipogonEucalyptus grandis33.4311.5790.72237forward
CNT30618958Oryza rufipogonSesamum indicum50.926.4888.92361forward
CNT3020650Oryza rufipogonCitrullus lanatus50.3520.5291.6357forward
CNT30730408Oryza rufipogonCorchorus capsularis51.0676.5390.61362forward
CNT30632297Oryza rufipogonVigna unguiculata50.2120.1486.24356forward
CNT30201085Oryza rufipogonPisum sativum50.3517.6791.32357forward
CNT3047566Oryza rufipogonPrunus dulcis32.8612.0893.13233forward
CNT30194121Oryza rufipogonSecale cereale68.4154.1996.29485forward
CNT30589320Oryza rufipogonMusa acuminata18.4826.9596.95131forward
CNT30237795Oryza rufipogonBrassica oleracea32.866.0791.42233forward
CNT30510815Oryza rufipogonSolanum lycopersicum33.4349.6988.19237forward
CNT30171250Oryza rufipogonTrifolium pratense14.2527.6793.07101forward
CNT30598583Oryza rufipogonFraxinus excelsior35.425.286.45251forward
CNT30445979Oryza rufipogonSaccharum spontaneum55.0199.2497.69390forward
CNT30232528Oryza rufipogonAnanas comosus53.3119.195.77378forward
CNT30217417Oryza rufipogonKalanchoe fedtschenkoi52.7579.9187.7374forward
CNT30655373Oryza rufipogonRosa chinensis52.758.9391.71374forward
CNT30627898Oryza rufipogonDaucus carota50.3511.691.6357forward
CNT30689225Oryza rufipogonTriticum urartu69.6841.9493.12494forward
CNT30595881Oryza rufipogonOryza meridionalis63.8944.1599.78453forward
CNT30360010Oryza rufipogonLactuca sativa29.919.7490.09212forward
CNT3057361Oryza rufipogonAmborella trichopoda32.724.6191.81232forward
CNT3022800Oryza rufipogonPopulus trichocarpa47.9510090.59340forward
CNT30332506Oryza rufipogonDioscorea rotundata56.1443.6988.94398forward
CNT30149145Oryza rufipogonBrachypodium distachyon56.9822.4998.02404forward
CNT30604206Oryza rufipogonOryza punctata25.8145.9895.08183forward
CNT30114189Oryza rufipogonFicus carica50.219.0489.33356forward

Expression of CNT30103542

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MKFLIRSSDLIYLINGSTTKPPFSEKGEWSYSNSKRFVIFNQFCASI*

Sequence

>CNT30103542
TTTTTTTAAGAGTATAAGTCCCTATCTATATCTACTTTCCTTGAGCATAATATAGATTTTTTTATTCGATTCCAAATTCCAAGATAACTCATTAGAATTA
TTAATAAGATGGTCCTGATATATTAGCAATATTTATATTGCCCCTTTTTATTCGCTTTATTACTTCTATTCTAGACCCTATCGTTTATCCTTATGAAATA
TAATATAAAATAGAAGGCAGAGGAAAGAGATATAATGAAATTCTTGATTCGATCTTCCGACCTAATTTATTTGATTAATGGATCAACAACCAAACCCCCA
TTTTCTGAAAAAGGAGAGTGGTCTTATTCAAATTCAAAGCGCTTCGTAATCTTCAACCAGTTCTGTGCTTCAATATAATTTCCCGGAGTAAGCGCTATAG
CTTGTTTCCAATACTCAGCAGCTTGATCAAACCAAGCTTCTGCAATTTCTGAATCACCCTGTAGAATGGCCTATAGTCGCACGTAATGACAGATCACGGC
CATATTATTAAAAGCTTGTGGTAAGAAGGGGTTTCGTTCTAGTGCCCGGAAATAATATTCCAAAGCCTTTGTATGCTCTCCATTGCTTGTGTGTATAAGG
CCTATGTTATAGAGTATATAACTTCGATCATAGGGATCAATTTCTAGTCGCGTAGCTTCATAATAATTTTGCAAAGCTTCTGCATAATTTCCTTCGGATT
GAGCCAACA