CANTATAdb - search

Detailed information on CNT30103502

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000869, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30692856	Oryza rufipogon	Oryza sativa	100.16	35.71	96.59	615	reverse complement
CNT30596367	Oryza rufipogon	Oryza meridionalis	49.51	100	97.04	304	forward

Expression of CNT30103502

Peptides detected in this lncRNA

>peptide 1 (31 aa)
QVHKDSKGWHNIGSFAKAAFSKTFKRGKTVK*

>peptide 2 (39 aa)
MLPCPEIPPRHCKGGNRDNTLCTTQLKTMHRSRIIVTPI*

>peptide 3 (38 aa)
MDSPATPVDFSPFLSLAHYNESRYTKDKAVAHAGLWLAR

Sequence

>CNT30103502
TGCAAGTGCACAAGGATTCCAAAGGATGGCATAATATAGGCTCATTTGCAAAAGCAGCATTTAGCAAAACATTTAAGAGAGGTAAAACAGTGAAGTAATT
AATCAGAAATTTTAATCAACACTGAACAGCACACCCATGCTCCACAGGCCCAACCATTCTGAACAACCATACCCGGCTGAACAGATCTAACTCCAAACCA
GGAGCTAAACAAATTATTACCAGGTATAACATCCATAATTATTGTGAGAGGTGTGAGACTAATCACGAAAAACATTGCTCAACTTGCCCATAACCGCGGG
CACGGCTATTCGAATAGTTTTACTCTGGCCAGAGGTGTACCACTGTACCCACAAGACACGATTCCACACATGTTGCCATGCCCCGAAATACCACCACGGC
ATTGCAAAGGGGGAAATCGTGACAATACCCTTTGCACAACACAACTCAAAACAATGCACCGTTCCCGGATCATAGTCACCCCCATATAAACAAGGCATGG
ACTCCCCAGCGACCCCCGTGGACTTCTCGCCATTTCTCAGTCTGGCGCACTATAATGAATCACGCTATACAAAAGATAAAGCCGTTGCCCACGCTGGCTT
GTGGTTGGCACGAT