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Detailed information on CNT30103497


BLAST search results

BLAST vs Swiss-Prot:
sp|P04748|AMY4_HORVU, E-value = 5e-32

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554808Oryza rufipogonOryza glaberrima64.6269.7199.74389forward
CNT3068090Oryza rufipogonLeersia perrieri31.7329.8494.76191forward
CNT30604590Oryza rufipogonOryza punctata23.4227.5492.91141forward

Expression of CNT30103497

Peptides detected in this lncRNA

>peptide 1 (73 aa)
LEMSTRANYQIALSSAAATNPLSAAPPPLGAIPSIFSGGAEARRVEVLPSPPSSPLYWFGGGAERRSPSGPIR*

Sequence

>CNT30103497
TTGGAGATGTCAACTCGCGCTAATTACCAGATTGCCCTCTCCTCGGCCGCGGCGACGAATCCCCTTTCCGCGGCGCCGCCGCCGCTAGGTGCCATACCGT
CGATCTTCTCCGGCGGCGCCGAAGCACGCCGCGTCGAAGTCCTCCCCTCTCCTCCGTCCTCTCCCCTCTACTGGTTCGGCGGCGGCGCGGAGCGGAGATC
TCCATCCGGGCCGATTCGGTGATTCTTCCTTCGGTTCGGCACAAAATAGTCCTGAAAGAAATATTTGGCCTAGTGGCGCCGCCCTGCTGGAACTCTAAGA
CCACTCTTTTCCCAGACGCAGTAATTGTTGCCGTGAGCAACGACATGGAAGTCTGACGGGATCAAGTTGCCCACATCATACCGAGTCCCAATCTTTGTGA
TCACCTTGTCATCGATCATGGCGACGTAGACATCTCCGTCAGCAGCAAGGATGTTCAGCTTGCTCCCAGGATGAATTCCATTTCTTGACCTCACCGCGGC
CAATGTGCTGATCTCCTGCTTCAAGTTCCAGTCAAACACATGGTCGTAGAACTGTACAGACAGACGGAATGTTAGTTCGAGATTATGGTTAACAAATATC
GA