CANTATAdb - search

Detailed information on CNT30103479

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30690827	Oryza rufipogon	Oryza sativa	53.25	28.54	99.62	787	forward
CNT30523471	Oryza rufipogon	Setaria italica	36.27	34.63	93.84	536	forward
CNT30687453	Oryza rufipogon	Triticum urartu	30.11	8.32	98.2	445	forward
CNT30115707	Oryza rufipogon	Oryza nivara	56.7	19.23	100	838	forward

Expression of CNT30103479

Peptides detected in this lncRNA

>peptide 1 (77 aa)
MFLKQVLQTIVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNQLREHMVIEPTGDHSIGRLPQSQARVSGVR*

>peptide 2 (76 aa)
MFATVLFSTVSDFLIFLVRKKSLLHKYSPLLALVSGATGGIRAAREEAVAVVELVLHTLLDKEGKARRISTGEKVI*

>peptide 3 (34 aa)
PKDMFETWLRVRRSPFRCWTWNLNKDEYSVLNSD*

>peptide 4 (34 aa)
MRCSKGEANASLATRESSKSESIHLLANTGSSKI*

Sequence

>CNT30103479
ACCCTAAGGATATGTTTGAGACATGGCTCAGGGTGAGAAGGTCCCCGTTCAGATGTTGGACGTGGAATCTCAATAAAGATGAGTATTCTGTTCTCAATTC
CGATTGAATGGACATCTGTTTTATTTCAAGAAGATCCCCAAGTAAGGCACTAGTCTCATATTCTATGAATGCCCACAATCGCTTGTGAAAGAATCAGCTC
TTCTTTGCATGTTCGCAACTGTCTTATTTAGTACTGTTTCAGATTTCCTGATTTTTTTAGTGCGAAAGAAATCGTTGTTACACAAGTATTCACCCTTGCT
TGCTCTCGTAAGCGGTGCTACAGGTGGAATAAGAGCTGCTCGAGAAGAAGCTGTAGCTGTGGTTGAGCTAGTGCTTCATACCTTACTGGACAAGGAAGGA
AAGGCAAGGAGGATCAGTACGGGAGAGAAAGTGATTTAAGAATGTGAATTTGATTTGATAAGTAATCAAGGCAATTAGCTTAGGTTCATCCCGAATCCAT
TCCATGTTTCTTAAACAAGTCCTTCAAACCATCGTGCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATCAGCTCCGGGAACACATGGTAATAGAACCCACTGGAGATCATTCAATCGGGCGTCT
TCCACAAAGTCAAGCTAGAGTAAGTGGCGTAAGATAAGATAGATGTTCACTTTCATCGACCAATGTACCTGAAATTCCTATACGTAAAGTCGAGAGCTAG
AGAGAGTAAATGAGATGTTCAAAGGGTGAAGCTAACGCTTCCCTGGCCACTAGGGAGTCATCAAAGTCTGAGTCCATACACTTGCTAGCTAATACTGGAT
CGTCAAAGATCTGATTATATTTCATAATACCTTCTGTCTCTCTCCTAAGGGATCCAATCAGAAGGAATTCCCTCACTTCGCTCATGATAGTCGCTCGAGT
TCCCTTTTCCTTTTTAGTTGAGTTTCGCCTCTCCTCCTTTCCTTGTCTCCATTCTGATTGATTCGTTTCTTCGCGCAAGCACTTGGTTCGCCCCTTACTA
TAACCATCCCACTCAATCTTTTACACCGATGTTTCGTACTCTCTCGACCAGGTCATCATAAGAAAATACTGCCAAATCTTTCCGAAATGAGAGAAGGAGG
GAAGGCGCGCTACAACTAACTGCTGAAAAACGCAAGATTAGCGCTAAGAAGCAACCCTAGTTTAAGTACTAGCGTCCCACCCCAACGTTCTTGTACTTAA
AAAGACTCTCCCCGCTTGCTGCTCGCCTCAGCCAGACGTGGCTTATGTAGTGGTCGGCATTCCTACGTGCTCCGACTGATCCCCACAGGAGATTATGTGA
GGGGTCTTGGAAACTGTCGTGACGCTTTGGTGACGAAGGTCACCGGGGTGACTATGGAAGGATTCCGTGGTAGTCTCT