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Detailed information on CNT30103455


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554858Oryza rufipogonOryza glaberrima83.2285.9398.4873forward
CNT30580794Oryza rufipogonEchinochloa crusgalli40.042586.19420forward
CNT30117581Oryza rufipogonOryza nivara80.7453.499.41847forward

Expression of CNT30103455

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MLRRRRRRQRTSWRSWRRRCSGRASGAWRRRRRGAGRGRRRCRGS*

>peptide 2 (82 aa)
MFWQSVWSLASTEAWSGPREAALSGKLSRAASPRRRISATHFPQCRCRTPRYSFCGRGGVAAAPAAEADDDDAFIGWARGASG

Sequence

>CNT30103455
TTTTAACAACGACGCTAAATAATAATAATAGTAGTAGTAGAGGTAATTCACATTACAAGTTCTTATAACACGCTAATAATATTACAAGACATAATAATAA
TAATGCTACTACTACTGTTTACAACCTGTAAGATCAGCAGTAGAAGGTAATAACAGACTTTAGAAGAGCAATGGACGCCACGGCCGGAGTAACTGACCAG
TGACCGGCCACCGGAGACGCACGCCGGACACAAAAACGCCGGCTGCCGGTAGCATCGGCGTCTCCGGTTGAGGAAGAACACCAACCAACCCTAGCATCTA
CAGAGGAAACAAGTCCGGAGAGAGATCGATCTACGTACACAAACGAACCAAACCAAAAGGATTAGGGACTATAAAACTGCTAATCCATGCCCGTCCGTGC
GGTGCAGAATGTCTAAAATCCCATCTGCACGGCGGCGGCGGCGGCGACGATTAGGCTAACGACGGCGTGAGTACTAGCCAAGAAGTGGTGGTGGTGTTAA
TTGGCGGCGAGGAGGGAGTCCCAGTCGATCTCGTAGGACGGGTACTTGGTGAGGGCGAAGGCGGCGGCCTCGTCCCACGGCGCCTCGCTGAAGTCGAGCT
GCTGCATCTCCGGCACGGTCGCCGGCGTCTCGGCCGTGGTGGCGGCGGAGGACGGCGACAGGGAGGGCGACGAGTCGGCGGACTCCAGGCAGGACGACGC
GTCGTCGGAGGACGGCGACGAGCAGTTGCTGGTGGGCGCGGAGGATGTTGCGGCGGCGGAGGCGGAGACAGAGGACTTCTTGGCGTTCTTGGCGGCGGCG
ATGTTCTGGCAGAGCGTCTGGAGCTTGGCGTCGACGGAGGCGTGGAGCGGGCCGCGGGAGGCGGCGTTGTCGGGGAAGTTGAGCCGCGCCGCGTCGCCGC
GGAGGCGGATCTCCGCCACCCACTTCCCCCAGTGCCGCTGCCGCACGCCGCGGTACAGCTTCTGCGGCCGCGGCGGCGTCGCCGCCGCCCCCGCCGCCGA
AGCCGACGACGACGACGCCTTCATCGGCTGGGCGCGCGGGGCGAGCGGG