Detailed information on CNT30103422


BLAST search results

BLAST vs Swiss-Prot:
sp|P12330|CB21_ORYSJ, E-value = 1e-158

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695874Oryza rufipogonOryza sativa83.89101.9797.241088forward
CNT30521860Oryza rufipogonSetaria italica46.0353.2688.61597forward
CNT30641326Oryza rufipogonNymphaea colorata41.3347.9986.94536forward
CNT30188246Oryza rufipogonSecale cereale43.2552.9790.73561forward
CNT30285424Oryza rufipogonTriticum aestivum37.1667.793.36482forward
CNT30554923Oryza rufipogonOryza glaberrima76.189.2497.26987forward
CNT30443381Oryza rufipogonAegilops tauschii42.2556.6188.5548forward
CNT30239793Oryza rufipogonAvena sativa53.3568.9988.58692forward
CNT30668255Oryza rufipogonTriticum dicoccoides45.9560.6989.09596forward
CNT30455809Oryza rufipogonSaccharum spontaneum54.2864.6589.77704forward
CNT30131530Oryza rufipogonLolium perenne46.1173.0286.62598forward
CNT3011673Oryza rufipogonZea mays32.6154.394.09423forward
CNT30345522Oryza rufipogonEragrostis tef41.5654.2893.32539forward
CNT30363150Oryza rufipogonSorghum bicolor41.3344.3393.28536forward
CNT30370987Oryza rufipogonOryza glumipatula55.05103.3396.5714forward
CNT30577669Oryza rufipogonOryza barthii53.4373.898.85693forward
CNT30579967Oryza rufipogonEchinochloa crusgalli36.0845.9393.16468forward
CNT30497363Oryza rufipogonDigitaria exilis46.1150.8190.8598forward
CNT30117588Oryza rufipogonOryza nivara62.8467.5299.63815forward
CNT30604592Oryza rufipogonOryza punctata46.1159.9893.48598forward
CNT3063784Oryza rufipogonSelaginella moellendorffii43.5649.2686.73565forward

Expression of CNT30103422

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MVIFWDRGSICFRSNRDEKSANQNNTTDKYLDH*

>peptide 2 (39 aa)
MVIRASPKSAEEVDGAARAITGEESAMVAAAIDAVSCES*

>peptide 3 (43 aa)
MAWTKKPNMENMARRPFLISFTLSSANASGSSARPSGSKAPPG*

>peptide 4 (48 aa)
MPQYKQFRLHIYTIHSQKWLYFGIEGVFVSDLIEMRNPLIRITPRIST*

>peptide 5 (31 aa)
MRYPSTAPMSTTCTAQMARMLCAWIRLGLPR*

Sequence

>CNT30103422
AGTAGACTCATTTTATTGTGCGCTTTGGATTTTTTTTAAGACCAAACGCTTTGGATTTTAACCCACTAAATCAGAGGATCCATTATCTTCCTAGATTCGA
CCCAATCTATTGTATACGTAAATTTAAAGTACTAATTAATCCTTCCATGCCACAATATAAACAATTTAGACTACATATTTATACTATACATAGCCAGAAA
TGGTTATATTTTGGGATCGAGGGAGTATTTGTTTCCGATCTAATAGAGATGAGAAATCCGCTAATCAGAATAACACCACGGATAAGTACCTAGACCATTA
GTTGGGAAACGAATAAAATCATTATTGCAAAAACATCATCTTCTTCTTCATCTTCTTAGTGTACACAACACCAACTCGATCATCATCTCGTCGCACTAAA
CCCATCTTCCCCAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATCCAACCACAATTAACCACTGCTAAGCTACGGTCCCCCACTTCACTTGCCGG
GGACGAAGTTGGTGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTGGTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTG
GACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTGAGCTCCGCGAACGCCTCGGGGTCATCGGCGAGGCCGAGC
GGGTCGAAGGCGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGCCCGCCGGCGATGCGGTACCCCTCGACGGCGCCCATGAGCACCACCTGCA
CCGCCCAGATGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAGGTAGTCGAGCCCGCCCTCGCTGAAGATCTGCGAGCCCGCCTTGAACCA
CACGGCCTCGCCGAACTTGACGCCGTTCCGGGCGAGGAGCTCCGGGAAGACGCAGCCGAGCGCGCCCAGCATCGCCCACCGGGAGTGGATCACCTCCAGC
TCCCGGTTCTTGGCGAACGTCTCCGGGTCGGCGGAGAGCCCCGCGGTGTCCCACCCGTAGTCGCCCGGGAACTCGCCGGTGAGGTAGAGGACGCGGTCGG
CGCCGTACCACGGGCTCCCCGACGACGCCGCCGGCTTGGGCTTCGCGGCGGTCTTGCGCATGGTGATCCGCGCCTCGCCGAAGAGCGCGGAGGAGGTCGA
CGGCGCCGCGCGGGCCATCACCGGGGAGGAGAGCGCCATGGTGGCCGCGGCCATTGATGCAGTGAGCTGTGAGAGCTGAGAGAGATGGCGATGAGCG