Detailed information on CNT30103415


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30619448Oryza rufipogonSesamum indicum59.6252.0291.39592forward
CNT30633270Oryza rufipogonCapsicum annuum35.1541.9589.68349reverse complement
CNT30541214Oryza rufipogonBrassica napus8.7628.6297.787reverse complement
CNT30439823Oryza rufipogonAegilops tauschii2964.4398.61288reverse complement
CNT30577102Oryza rufipogonOryza barthii22.5698.68100224forward

Expression of CNT30103415

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MKDDLESTQEDRESHIREKVTNGVEPSNIAKA*

>peptide 2 (45 aa)
MGVYRRSQRLARKGCYTKHYYLTTKKEKTIVVTRLTIVVRPAALA*

>peptide 3 (33 aa)
MDGRGLPAPKSDDSLVPLSIGTLWHTTATTPAL*

>peptide 4 (34 aa)
MHGDGTVLYERNAMGWMVEGCLRPKAMIHLSPCL*

>peptide 5 (35 aa)
KKKEEKELGVGAYITGSLLTKPSWQAPTVLLLFLT*

>peptide 6 (44 aa)
MELNQVTLQRHNDSRVGISPPSEPDVRDSPHPALCRGISTHCFP*

Sequence

>CNT30103415
CAAAAAGAAAGAAGAGAAAGAACTGGGAGTTGGCGCCTACATAACAGGTAGCTTGCTTACCAAGCCGTCCTGGCAAGCTCCTACAGTTCTCTTATTATTC
TTGACTTGACTTATTAATAAGAAAACTGCTCACTAACAAAATGAAAGACGATCTAGAATCTACCCAAGAAGATAGAGAGTCCCACATACGAGAAAAGGTC
ACAAATGGAGTTGAACCAAGTAACATTGCAAAGGCATAATGATAGTAGGGTCGGGATATCCCCGCCCTCCGAACCGGACGTGAGGGACTCCCCTCATCCG
GCTCTCTGCAGGGGAATCTCCACTCACTGCTTCCCCTAATATCCTCCCTTTACCACATCATGGGGGTTTACAGGAGATCCCAGAGACTCGCTCGGAAAGG
CTGCTATACCAAACATTATTACTTAACTACAAAGAAAGAAAAGACTATAGTAGTCACTAGACTGACTATAGTAGTCCGTCCGGCTGCTCTTGCTTAAATC
ATTACTCTTCATTCTCCCGTGCTCTAGCAATTGCGCTCCCTAGACCACTACCATTTAGTTAGGTAGGGACAATCAATCCATAGTTACGGGAATAACGGAA
TGCATGGGGACGGTACAGTACTCTACGAGAGGAATGCAATGGGATGGATGGTAGAGGGCTGCCTGCGCCCAAAAGCGATGATTCACTTGTCCCCTTGTCT
ATAGGGACCTTGTGGCATACAACCGCCACGACTCCTGCGTTATAGCCGCCCCTTTCTCTCTTTCTTTTGACTGCCTCGTGGACGGACGAAAGAAGGGAAG
TTACAGAAGGGGGCAGTGAAGGCTCGCCAAGTAGACAGCAAGCCCCCACCCCGTCAGTCCTGTGTTGCCGTAGCGTGCCCTACTTCAATAAGGTATTACC
TCGCCGAGGGGATAGGATTGGATTCATTCACTTGCATTCCTGCTAGCACTACAAAAAGCTCCGGTCTTAACGCCCTTACGGAAGCAGTGCAGC