Detailed information on CNT30103384


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000734, E-value = 5e-173

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555277Oryza rufipogonOryza glaberrima95.5410093.1493forward
CNT30370252Oryza rufipogonOryza glumipatula95.9315.5890.71495forward

Expression of CNT30103384

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MCRAGLHPSFIWRSVTGAHQPLGWAPPIRARSRPP*

>peptide 2 (43 aa)
MAQCDGGPPAIGLGAPDQGAVKAPLSRWAQGERDLSNNNYIRIK

>peptide 3 (33 aa)
MTAAGVTVVDVLAMRCGAAVALPVTGCAPSRSD*

>peptide 4 (68 aa)
MKKCRPSSSLALGCRGCGAGEVDGDDGCGSDGRGCPGDEVWRGGGASRHWLRPLSIGLGFVGWSWRRR*

Sequence

>CNT30103384
ACAATTGTTAGACTTTGCACTAGGATCACCTAGGTTAGATCTAGTCGGGTGGTTCTATTTGGGATTGATGTTTGAACTATAGAGATTGAAAACGGGAGAG
GGTTTAGATAGACCGACCGGTTGAGGTGTTGGAGGATGAAGAAGTGCCGGCCATCATCGTCGTTGGCGCTCGGTTGTCGTGGATGCGGCGCCGGTGAGGT
CGACGGCGATGACGGCTGCGGGAGTGACGGTCGTGGATGTCCTGGCGATGAGGTGTGGCGCGGCGGTGGCGCTTCCCGTCACTGGCTGCGCCCCCTCTCG
ATCGGATTAGGGTTTGTAGGGTGGAGTTGGCGGCGGCGGTGAATCTCGAACCATGTGCCGTGCCGGCCTCCACCCCTCTTTTATATGGCGCAGTGTGACG
GGGGCCCACCAGCCATTGGGCTGGGCGCCCCCGATCAGGGCGCGGTCAAGGCCCCCTTGAGCCGTTGGGCTCAAGGGGAGAGAGATCTATCTAACAACAA
TTACATTCGTATCAAA