Detailed information on CNT30103343


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30533086Oryza rufipogonEucalyptus grandis21.189.4688.61158forward
CNT30618998Oryza rufipogonSesamum indicum44.9120.5487.76335forward
CNT30200883Oryza rufipogonPisum sativum44.9123.0991.04335forward
CNT30226090Oryza rufipogonHordeum vulgare53.7539.7897.76401forward
CNT30434820Oryza rufipogonAegilops tauschii49.3310097.83368forward
CNT30212621Oryza rufipogonHelianthus annuus51.6122.0590.65385forward
CNT30689542Oryza rufipogonTriticum urartu53.7524.2697.26401forward
CNT30571978Oryza rufipogonVitis vinifera52.418.4891.82391forward

Expression of CNT30103343

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MSCSRFFDPNNRWDSWPFQNPCFRDRMTKNKKVYLINLLRSLF*

>peptide 2 (34 aa)
MPESQHQGLTQIERRRPLRDIVPIPVLNYRRLVS*

Sequence

>CNT30103343
TAGAAAGCTCCTCTTTCGGGGACTCCACACTCCCCCCACTTGGTGCTCTTCTCCAAACGGCATGGCTTCCTCTGAGTAAAGAATGAAAAAAAGAGTAAAG
GTGGTTATGAGCATTCCAAGAATAAATCCAATAAGTTTGGCACGTTCATAACTACCTTTTGGGGAAGAAGAGGTTGAGGACTAGGCTCTCCCCCCTGCCT
TCATCTGCCACTTTGTGGCATGTCTTGTTCTCGGTTTTTCGACCCGAACAACCGCTGGGATTCTTGGCCGTTCCAGAATCCCTGTTTTCGTGATCGAATG
ACGAAAAATAAAAAGGTCTATCTAATTAATCTCCTTCGCAGTTTGTTTTAAAGAAGCATCAGGTTCAATCTTTCTTTCGTTAGTTAATCCCCCTTTTTCG
TTGAAGGATTTTAGTAATTCTGGATTAATAGTACTTAGAATGGCTTTTTCATATTGAGAAATTCTGTCTAGTGGCATTCGATCACAGAAGCCGTTGACAG
CAGCATAAATCACAACAATTTGTTTTTCAATTGGAAGTGGTTCATATTGTGGTTGTTTGGGCACTTCTGTAAGCCTTGCACCTCTATTGAGTAATGCCTG
AGTCGCAGCATCAAGGTCTGACCCAAATTGAGCGAAGGCGGCCACTTCGCGATATTGTGCCAATTCCAGTTTTGAACTACCGCAGACTTGTTTCATAGCT
TTCAACTGAGCGGCAGACCCGACGCGACTGACGGATAAGCCAACGT