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Detailed information on CNT30103332


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002377, E-value = 6e-29

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696275Oryza rufipogonOryza sativa10077.5199.79972forward
CNT30117514Oryza rufipogonOryza nivara59.7710099.83581forward

Expression of CNT30103332

Peptides detected in this lncRNA

>peptide 1 (35 aa)
WALQIPTSHLLFLSLKLLLHRRETRSRRRRVSNTW*

>peptide 2 (83 aa)
MQQVAGPFYHVLTDRNAEQEKVQNQHTSVAAAIKYGIHCHVKSMSIGKRTDVDSYLSNLYIKCGQENNEDTKELMWSERHAYI*

>peptide 3 (71 aa)
LGVTNSNLPFALPLPKTLAPSKRNKIAPPPGVEHLVSGGCAAATGLLGRCGWRGVERSCCCCCWKEPGAAE*

Sequence

>CNT30103332
CTGGGCGTTACAAATTCCAACCTCCCATTTGCTCTTCCTCTCCCTAAAACTCTTGCTCCATCGAAGAGAAACAAGATCGCGCCGCCGCCGGGTGTCGAAC
ACCTGGTGAGCGGGGGCTGCGCCGCCGCCACAGGGCTTCTCGGCCGATGTGGGTGGCGGGGTGTGGAGAGAAGTTGCTGTTGCTGTTGTTGGAAGGAGCC
GGGAGCCGCTGAATGAGGAAGACCAGGCGTCGAACACCTACGAGCGTCGCCAACCGCTAGCCGCCCCTGTTTCGGCCGCACCACGCCGCGCGCCGTCGAA
CTCCGCCGTCTCGCCATCCCGTGATTCCGAAGGAGTTGCTGAGTTAATCAAAGATCCGGGTCAGCAAATCTGTGAGCAAGTGAGCGGCAGGAGATGTGGG
ATGCAACAAGTGGCTGGGCCGTTTTATCACGTTCTGACGGATAGAAATGCAGAGCAAGAGAAAGTTCAGAACCAACACACATCTGTCGCCGCAGCAATCA
AATATGGTATACATTGCCATGTGAAAAGCATGTCGATCGGCAAAAGAACAGATGTGGACTCTTATCTGTCGAATCTTTATATTAAGTGTGGACAGGAGAA
TAATGAGGACACCAAAGAATTGATGTGGTCCGAGAGGCATGCATATATATAGAAGAAGAAAAAACTAACGACTGGAGATCGAATATTTCTTGTGCAAAAA
CATTGAAGCGGCCTCCTGCACACTTGTGGTCCAAATAAACTAGCTAGTTACATTTAAATGGGAAAAATATCTGTTTTGTTTGGTACAGAGTAAAATGTAA
TTTTTTTTGCCGCCTATTCCTAGAATAATCTAATCCTAATTTGAATTATTTGTAAAATATATTTTGACGGAGATCTTTTGTTTTCTTTTTGAAAGAAAAC
GTGGCTCTATGTTTTAATCTAGACTGTTATATTATGAATATGATCGGAGTACATCCCATCTCAACATTGTAA