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Detailed information on CNT30103326


BLAST search results

BLAST vs Swiss-Prot:
sp|P80264|NDUS2_SOLTU, E-value = 8e-11

BLAST vs NONCODE:
NONBRAT004988, E-value = 9e-31

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30314569Oryza rufipogonCamelina sativa2513.0996.23212forward
CNT3061148Oryza rufipogonArabidopsis lyrata20.0568.2787.06170forward
CNT30651680Oryza rufipogonRosa chinensis21.8239.9695.14185forward

Expression of CNT30103326

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MCLPEPGEFPCSCCVRLASLAAAKGLGRPPMLRFPAVRPH*

>peptide 2 (43 aa)
MSKMKVALMIKISGETAKKRLNMWFRVSITSSAFIFNTDRETP*

>peptide 3 (66 aa)
MSSRMLRSGIRSEILDLPVPSRHGKEIRKILLFLFSSAMSKIFTYLPLLGCQTFQFEFKIPPPLSN*

Sequence

>CNT30103326
TATGCCCCCCCGATATCCCTATAGAGCGAAAGAGCTGCCTGGTGATCCCTAGGTTGCAGCACGTCCGGTCGTTAACTCCTCGCTAGCTGCCGCCGTTTTT
AGGACCGACCGACGCCTCACCTGCATGCACAGGTACCTACGTAGTGTAGTGTCGGTCGCACATTCATAATAGCGTTCGGACTCATGTGCCTTCCTGAACC
AGGGGAGTTCCCTTGCTCCTGCTGCGTACGATTAGCCAGCCTTGCGGCGGCAAAAGGATTAGGACGTCCCCCCATGCTAAGGTTCCCTGCGGTCCGGCCG
CATTAGGTTAGGGAGCTGGGCGATAATAGCTCCTCCGCACCCCAAGCGCGCTGCCCTCCTAGGCGCGCAACACTAAGTAATCCAAGCCAACCCACATTAC
TAACTAACGGTGGATAATCATCTTTCTTAGAGGTACTAAATACAACTCCATGAATGAGCAAAATGAAGGTTGCGTTAATGATAAAGATCTCTGGGGAAAC
CGCTAAAAAAAGATTGAACATGTGGTTCCGAGTTTCGATAACTTCTTCAGCTTTCATTTTCAATACTGATCGTGAAACACCATGAGCAGCAGGATGTTGA
GGTCCGGAATTCGAAGTGAAATTCTTGATTTGCCCGTTCCTAGTCGTCATGGGAAAGAAATAAGAAAGATATTATTATTCCTTTTCTCTTCAGCTATGTC
GAAGATATTTACTTATTTGCCGCTCCTTGGCTGTCAAACCTTCCAATTCGAATTTAAAATTCCACCCCCTCTCTCGAACTGAGCTATTCCGATGATAAAT
CACTAGGACGACATAAGACAGACACATAACCTACGTACCACAATTTCT