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Detailed information on CNT30103319


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT007369, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696265Oryza rufipogonOryza sativa93.1587.3299.81522forward
CNT30117611Oryza rufipogonOryza nivara49.5788.0499.75810forward

Expression of CNT30103319

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MFCCSCQNGKCLNIALKMSTSFASLDLCTSSAGCQHEKFMILTYVCEYVCNNEF*

>peptide 2 (56 aa)
APPSPTLISPSHAAPPPSPPPSTAAAPPLLHPSSRRHRSQSRDFLFLSRNRATLSP*

>peptide 3 (42 aa)
RAPLSNPNLSLSRGATAVAAALDCRRSAVVASVVSPPPISIA*

Sequence

>CNT30103319
CGCGCCCCCCTCTCCAACCCTAATCTCTCCCTCTCACGCGGCGCCACCGCCGTCGCCGCCGCCCTCGACTGCCGCCGCTCCGCCGTTGTTGCATCCGTCG
TCTCGCCGCCACCGATCTCAATCGCGTGATTTCCTTTTCTTATCCCGAAATCGTGCAACCCTCTCACCCTAACCCTAATCTTGTCCCCGCCGACCGACGC
GCCGCCCCTCCCCGCTCGAGTCCATGCCGCCGCAAGTTCGCCGTCGCAGGCCGCGTCACCCGGATCAGCGTTGACGTCGCACGCCTTCCTCCTCACATCG
CCCGGCATACGCTCGTCCTCGGTCATATCGGCGCCACCGCCGTCGCCGTCACACGCAGTCCTCCCCGTCCACCTCGCCGGCCTCGCGCCCTCGCCGCTCC
CAACCTCGCCCACGAGATCCTACTTTGATATGGTTGAGACTTCATAAATTAGTACACTTCCTCGATGACCCTTCAATGAATGCCTAAATACTAGAGGGTT
TCTACTACTCTCTAGGGACAGCCATATATCTTTGAGAATATTGATTTTATCCCCCTATTTGAGTCATATACAGAGACTGCTGTTGACCTTGAATTTATCC
CACAGCATTTGTGTGCATGGAGATATACTGAAGTCTTTTTTTCCAGTTATTCACAAATATAATCTGGTACATTGAATATTCAGTTTAATCATATCAGATT
TTCAACAGAGAATGTTTGCTATGTATCACTAATGACCCCATTTCAACAAGGTTCTGCACAAATCTGAAGATAGAGTTATGATTTTCTCAAAATTAACCAT
GATGTTATCCTTCCTTGAACTATTCATGTAACTAATCGGATAGAATATATAGCTTCTATGCACATATTTATGCTTTTAAATCAACTGTAAGTTTCTTCCT
TGAACAGCTGCATTCTATCCTTCAATGTCTTCACAAAATACTTTTTTTTTTCATCCTATCCATTTTTTACCGTCTATTTAATCAAATGGCACGGTTTTTT
TCGAAAGGGTTTCACCAATCCATATTATTATCCATTTACTGTCATTACCACTAATCATGGTTGCTGCATGGAAACAAAAATGGTTTCTCTTTCATGTTAA
CAGAAGCTATGAACCATCAGTGATATAAGTGAAATCAGTGATATTATGTGTATGTGTGACAAAAAATGAGTTATTATCTGCATGTGTTTCTCAAATTTAG
ATAGCAGGCCTAATCTTTTGTCGAGCTAGGAGAAGCCCTGAGTGCCCTGGTTAGGGATAACCTGGAGCTTTTTTATTATTAAATGAACCTGGAGCTAAAG
AGTTTTTTATGTTCTGTTGTAGCTGCCAGAATGGAAAATGCCTGAACATTGCTCTGAAGATGAGTACATCTTTTGCAAGTCTTGATCTGTGCACCTCTTC
AGCTGGTTGTCAGCATGAAAAATTTATGATTCTGACATATGTCTGTGAATATGTTTGTAACAATGAATTCTAAAAACATATATCTCTGAATACGTTTGTA
AATTTAGTTGGATTTTGTGAAGTTTTCAGTGAGCTTTGGAATGATTATGAGATAGCTAAAGATGACTATTGCTTGTATGGACCAACATGGTCTTGTATCA
TTGACTTGGTTGTAATATATTTGGAATGTGTCAA