« Back to Oryza rufipogon search


Detailed information on CNT30103292


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000270, E-value = 1e-115

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697041Oryza rufipogonOryza sativa70.2365.3694.02368forward
CNT30554279Oryza rufipogonOryza glaberrima77.2973.3791.6405forward

Expression of CNT30103292

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MVWIVWVISLLSYLTTACRGCSYFLGRRCRNF*

Sequence

>CNT30103292
CNAATTTGTTTTCCTCCTCAGTTAGGGTGTAGAGGGTTCCAACGTTGGAGGAGTTGAGTCAGATTATCGAAGGAGTTAAGGTACCTAATGACATTGATCG
GCATGGGGCGGGAGTAGCACCTTTGGACTACACATTATTATTGCACACTAATGAAATTTAGTTTTAGACTATGTTTTTGCTCAGCATAAGTTTTTCATAG
AACTTGTAAAGGTCATTTAAAGTTCTGGTCCTTATTTTCACGTGGAATTTATAGAGCTAGGATGGTTTGGATTGTGTGGGTTATTTCGTTATTGAGTTAT
CTTACAACTGCCTGTCGTGGATGTTCGTATTTTTTGGGGAGGCGCTGCCGAAATTTCTAATAATTTTGGGACTTAGTTTTTTAGTGTATTTTGGTGTGGC
ATTCTAGGTATGTGGTTACCTAGGATGTTACACACACACCCCTACGAACGCACACATGTATACTCTACCCCCTATGAGTACCTCTAAGAGTTTGGGCTGA
CATATTTTGAGATTGACAAAGTTA