Detailed information on CNT30103286


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT007273, E-value = 2e-167

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695842Oryza rufipogonOryza sativa70.190.5789.08586forward

Expression of CNT30103286

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSSILFAMSWYRYWFLGKSQAMHCSWHLL*

>peptide 2 (31 aa)
MVSLLVLRKESSHALLLALIVRDLWLFVRQD*

>peptide 3 (43 aa)
MSSLKYYVRFILLPRKCNLHFFYNSSLNCNLLSRCMLRTVKLC*

>peptide 4 (81 aa)
HGAIAHSPSRVRCAPPPPCRTTQQRCWPLPCPRLRLCLGPPSSPLAHFSVPSPSPLRFDLRVCSVSAYTVAGRSFMPACCL*

>peptide 5 (91 aa)
TGPSPTALAASAVRRPLPAEPRSSAAGPSPVPASACASDRRRRHWRTSRCHLLLRSVSISVFAPSLPTLLLAAPSCRHVACDLARGQPVWS*

>peptide 6 (44 aa)
MLTIMLPRIKGACHTAPPHGVSLTVRIVLLRIRSICLGFVSWLD*

Sequence

>CNT30103286
CACGGGGCCATCGCCCACAGCCCTAGCCGCGTCCGCTGTGCGCCGCCCCCTCCCTGCCGAACCACGCAGCAGCGCTGCTGGCCCCTCCCCTGTCCCCGCC
TCCGCCTGTGCCTCGGACCGCCGTCGTCGCCACTGGCGCACTTCTCGGTGCCATCTCCTTCTCCGCTCCGTTTCGATCTCCGTGTTTGCTCCGTCTCTGC
CTACACTGTTGCTGGCCGCTCCTTCATGCCGGCATGTTGCTTGTGATCTGGCGCGGGGCCAGCCTGTGTGGTCATGATGGTGTGATGAGGTGAATCAAGG
ACCGATTCGAGGCAAATGAATAAATGAGCTCCATATTGTTTGCGATGTCATGGTATCGTTATTGGTTCTTAGGAAAGAGTCAAGCCATGCACTGCTCTTG
GCACTTATTGTAAGAGATTTATGGCTTTTTGTTCGTCAAGATTAAATGCTTCGATGGGAGCAGCTTGTGGAAAGTTGTAATGTCTTCCCTGAAGTATTAT
GTTAGATTTATTTTACTTCCAAGGAAATGTAATCTCCATTTTTTTTATAATTCCTCGTTGAATTGTAACTTGCTAAGCAGATGTATGCTCAGGACAGTTA
AACTATGCTGACCATTATGTTGCCAAGAATAAAGGGGGCATGCCATACGGCACCTCCTCATGGTGTGTCCCTCACGGTGCGAATTGTTCTGCTTAGAATT
AGATCAATCTGTTTAGGGTTTGTTTCCTGGTTGGATTGATCCCGACTGATTCAGGATGTTGGGGTCGTGCAACTGCTGTAGGGGCCCGCGGTGCATAGGC
CCCAGATATCGTTGTGTATCGTTTGTGTGCTTACGG