Detailed information on CNT30103284


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30677965Oryza rufipogonSetaria viridis20.0925.685.88170reverse complement
CNT30522140Oryza rufipogonSetaria italica20.21985.96171forward
CNT3017148Oryza rufipogonZea mays19.3975.9379.88164reverse complement

Expression of CNT30103284

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MPSQGPLTRGWKSISLRLSFSHSVFIHKRQLNTLVT*

>peptide 2 (40 aa)
MVKCVATLAQCCCNILPIFFVIPVVTIHLIGSHPHTKLLV*

>peptide 3 (35 aa)
MPNSPGAYQYGFLHSVAALHTKQHRHTHRHQDRPL*

>peptide 4 (34 aa)
VAFSDSEIVTKNLVWSNALPLLLNAAAIYFQFSL*

>peptide 5 (51 aa)
MRCHSCSMLLQYTSNFLCDTCSDDPLDRQSPPYQTSCLKHQHTTCGDSFLP*

>peptide 6 (48 aa)
MKCTTSHHNFDMCFQRKKWLAFKYSEAVLQGTKCSLNSCSKRGMPKVE*

Sequence

>CNT30103284
GTTGCCTTTTCAGATTCTGAAATAGTCACCAAGAATCTTGTATGGTCAAATGCGTTGCCACTCTTGCTCAATGCTGCTGCAATATACTTCCAATTTTCTT
TGTGATACCTGTAGTGACGATCCACTTGATCGGCAGTCACCCCCATACCAAACTTCTTGTTTAAAGCATCAGCACACAACATGTGGTGACTCTTTTTTAC
CTTAAAATCTGCATGTTGTTTTTTCAAGTATTCCATATACCACTCTAGCATGAATTTTGTTTGATCCTCATGCCAAGTCAAGGACCTCTCACGAGAGGTT
GGAAAAGCATCAGCCTTCGCCTTTCCTTTAGCCATTCTGTTTTCATTCACAAGAGACAGCTCAATACATTAGTTACATAATTTAGAGAACAACTTAAATC
TAAGGTACAGTTTGTCCTACTTTATCTTCCCACATCTTTTTAGCCGTATCGTCTCTTTTCTTTGCCCATGCCAAATTCTCCTGGTGCATATCAGTACGGT
TTCTTACACTCCGTGGCAGCGCTGCATACCAAGCAGCATCGTCATACACATAGACATCAGGACCGTCCTCTATAATCCAGTTATGAAGTGCACAACAAGC
CATCACAATTTTGACATGTGTTTTCAAAGGAAAAAATGGTTGGCATTTAAATATTCTGAAGCGGTTCTTCAAGGCACCAAATGCTCGCTCAATAGTTGTT
CTAAGAGAGGAATGCCGAAGGTTGAATAACTCCTTTGGGTTCTCTGGTTCTCTAGCGCCCTTATATTCTTTTAGGTGATATCGGGTACCTCGGTATGGGG
GTAATACACCAGGTCTAGCTGCATATCCGGCATCAGCTAGGAAATA