CANTATAdb - search

Detailed information on CNT30103269

BLAST search results

BLAST vs Swiss-Prot:
sp|Q69QQ6|HSP82_ORYSJ, E-value = 1e-73

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30695840	Oryza rufipogon	Oryza sativa	59.4	77.62	99.44	534	forward
CNT30224612	Oryza rufipogon	Hordeum vulgare	28.03	44.37	90.08	252	forward
CNT30554828	Oryza rufipogon	Oryza glaberrima	46.05	79.31	97.83	414	forward
CNT30371090	Oryza rufipogon	Oryza glumipatula	53.28	99.38	99.37	479	forward
CNT30149623	Oryza rufipogon	Brachypodium distachyon	32.81	61.46	87.8	295	forward

Expression of CNT30103269

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MSASASADSSSSMLRPSLSIRWILVPKVLGSFTDLSFLSASARLRSSSMMEFSGLISMVFLLDM*

>peptide 2 (85 aa)
MLESLRAWAFMILSMLAHLLDHLAQTLELLLEFLLPLLLVLTLIKLQTFLGGRDELLAFKLLKLTNSVLINGINHVQDLITLLLQL

>peptide 3 (40 aa)
MTTMALSRPPPSCSRRRRPPAAACRRQPQQTRPRRCSGRA*

Sequence

>CNT30103269
TCCGGTGTCAACAAGAAGCTCAGTTCAAAATAGCATATCAAAAAAATTGTATCAAAGATAGATGTACTACTACGATGTAAAGAGATGGGGGCAACAGAGA
AAAAAAAAAGGCCCATTCAAGCTAAGAACAAAGTGGAGATAATGCAGAACAAAGAGTTACTATAAAAGGGCTAATGCAGAATAAGAAAATACAGATTCTG
GATTAATTAACTAGCATATTTAAATTTAAAACGTAACTGTTTGAGCAAATACCACGAAATGTTCAGGCGCTAAGATACGGCAATACCGATACATCCAGCA
TAGCAAAAATGGCGAAGAGCACAGAGTCAGATAAAGCTATAGAGAACTAGGGCTCCAGGAGATGGGGGCCGAATGACAACCATGGCGCTTAGTCGACCTC
CTCCATCTTGCTCTCGCCGGCGTCGTCCTCCAGCGGCGGCATGTCGGCGTCAGCCTCAGCAGACTCGTCCTCGTCGATGCTCAGGCCGAGCTTGAGCATC
CGGTGGATCCTGGTGCCGAAGGTGTTGGGGTCCTTCACAGACTTGTCGTTCTTGTCAGCATCGGCACGCTTGCGGAGCTCGTCCATGATGGAATTCTCCG
GGTTGATCTCCATGGTCTTCTTGCTCGACATGTAGCCGGCCATGCTGGAGTCCCTCAGAGCCTGGGCCTTCATGATCCTCTCCATGTTAGCACACCTCCT
TGATCACCTTGCACAGACCCTCGAACTTCTCCTTGAGTTCCTCCTGCCGCTTCTTCTCGTCCTCACTCTCATCAAGCTTCAGACCTTCCTTGGTGGCAGA
GACGAGCTTCTTGCCTTCAAACTCCTTAAGCTGACCAACAGCGTACTCATCAATGGCATCAACCATGTACAGGACCTCATAACCCTTCTTCTTCAGCTT