CANTATAdb - search

Detailed information on CNT30103267

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT007470, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30604835	Oryza rufipogon	Oryza punctata	46.55	100.39	87.11	256	reverse complement

Expression of CNT30103267

Peptides detected in this lncRNA

>peptide 1 (56 aa)
LSLFYSLKNISSNTLWACYTFFSAPPPQPIFVILPSLKFVYRLVVRQRMQLPGGEG*

>peptide 2 (38 aa)
MLIPIAKLFCLQIKLHAMMNILLAIMPWLDYCLPLIPS*

>peptide 3 (53 aa)
EPFLLPQKHFVEHLVGVLHLLLRSTTAADLRHSAVSQICVSVSREATYAASRR*

Sequence

>CNT30103267
CTGAGCCTTTTCTACTCCCTCAAAAACATTTCGTCGAACACCTTGTGGGCGTGCTACACCTTCTTCTCCGCTCCACCACCGCAGCCGATCTTCGTCATTC
TGCCGTCTCTCAAATTTGTGTATCGGTTAGTCGTGAGGCAACGTATGCAGCTTCCAGGAGGTGAAGGTTGATCAAGATTATATCAATAATAAGGACGATT
TTGAGCAGGCAAGTCATCACTATTCTTTGAACATGTTGATCCCAATTGCGAAATTGTTTTGTTTACAAATAAAATTGCATGCAATGATGAACATCCTACT
TGCGATTATGCCATGGCTTGATTATTGTTTACCCCTTATTCCTTCGTAACCATGATTACGTATGAGTCCCTAGTCAATTATGACAATTGCTTAGAAATGC
TATTCTAGAATCATGCATACTCATATTTATCAAATGCTATATGCTTGGGCAATTACCTTTGGGGAAGGTAATTGAGATGCGGCATGTGGAGACATGAGCG
CCACATTGCCATGAAATTGATGACATGATTTGTGAAAGAAAAATAAAGTG