Detailed information on CNT30103258


BLAST search results

BLAST vs Swiss-Prot:
sp|P08222|CB22_CUCSA, E-value = 7e-77

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671434Oryza rufipogonSetaria viridis41.4956.3689.86434forward
CNT30684416Oryza rufipogonTriticum urartu39.9648.6690.43418forward
CNT30362617Oryza rufipogonSorghum bicolor41.4951.7988.71434forward

Expression of CNT30103258

Peptides detected in this lncRNA

>peptide 1 (39 aa)
MVIRASPKSAEEVDGAARAITGEESAMVAAAIDAVSCES*

>peptide 2 (78 aa)
FNPLNQRIHYLPRFDPIYCIRKFKVLINPSMPQYKQFRLHIYTIHSQKWLYFGIEGVFVSDLIEMRNPLIRITPRIST*

>peptide 3 (33 aa)
MVIFWDRGSICFRSNRDEKSANQNNTTDKYLDH*

>peptide 4 (43 aa)
MAWTKKPNMENMARRPFLISFTLSSANASGSSARPSGSKAPPG*

>peptide 5 (31 aa)
MRYPSTAPMSTTCTAQMARMLCAWIRLGLPR*

Sequence

>CNT30103258
TTTTAACCCACTAAATCAGAGGATCCATTATCTTCCTAGATTCGACCCAATCTATTGTATACGTAAATTTAAAGTACTAATTAATCCTTCCATGCCACAA
TATAAACAATTTAGACTACATATTTATACTATACATAGCCAGAAATGGTTATATTTTGGGATCGAGGGAGTATTTGTTTCCGATCTAATAGAGATGAGAA
ATCCGCTAATCAGAATAACACCACGGATAAGTACCTAGACCATTAGTTGGGAAACGAATAAAATCATTATTGCAAAAACATCATCTTCTTCTTCATCTTC
TTAGTGTACACAACACCAACTCGATCATCATCTCGTCGCACTAAACCCATCTTCCCCAACCCAAAGACAACGAACTCGCTGGCCACAAATCCATCCAACC
ACAATTAACCACTGCTAAGCTACGGTCCCCCACTTCACTTGCCGGGGACGAAGTTGGTGGCGTACGCCCAGGCGTTGTTGTTGACGGGGTCGGCGAGGTG
GTCGGCGAGGTTCTCGAGGGGGCCCTTGCCGGTGACGATGGCCTGGACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTC
ACCTTGAGCTCCGCGAACGCCTCGGGGTCATCGGCGAGGCCGAGCGGGTCGAAGGCGCCGCCGGGGTAGAGCGGGTCGACGACCTCGCCGAGCGGCCCGC
CGGCGATGCGGTACCCCTCGACGGCGCCCATGAGCACCACCTGCACCGCCCAGATGGCGAGGATGCTCTGCGCGTGGATCAGGCTCGGGTTGCCGAGGTA
GCTCGGCGGCTCGCCGGAGAGCGGGCCGAGGTAGAGGACGCGGTCGGCGCCGTACCACGGGCTCCCCGACGACGCCGCCGGCTTGGGCTTCGCGGCGGTC
TTGCGCATGGTGATCCGCGCCTCGCCGAAGAGCGCGGAGGAGGTCGACGGCGCCGCGCGGGCCATCACCGGGGAGGAGAGCGCCATGGTGGCCGCGGCCA
TTGATGCAGTGAGCTGTGAGAGCTGAGAGAGATGGCGATGAGCGAG